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annotate CMakeLists.txt @ 2654:97fcc320deb3

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removing ITK suport into a separate project
author Vladimir S. FONOV <vladimir.fonov@gmail.com>
date Thu, 22 Mar 2012 17:00:25 -0400
parents 862428fcdbce
children 584b0bdfa619
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 # CMakeFiles.txt for the MINC2 library
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2 #
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3 # Andrew Janke - a.janke@gmail.com
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4 # Vladimir S. FONOV - vladimir.fonov@gmail.com
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6 PROJECT(minc2)
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7
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8 SET(MINC2_PACKAGE_VERSION_MAJOR 2)
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9 SET(MINC2_PACKAGE_VERSION_MINOR 1)
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10 SET(MINC2_PACKAGE_VERSION_PATCH 20)
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11 SET(PACKAGE "minc2")
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12 SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
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13
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14 SET(PACKAGE_NAME "minc2")
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15 SET(PACKAGE_VERSION "${MINC2_PACKAGE_VERSION_MAJOR}.${MINC2_PACKAGE_VERSION_MINOR}.${MINC2_PACKAGE_VERSION_PATCH}")
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16 SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
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18
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19 CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
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20
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21 IF(NOT MINC_TOOLKIT_BUILD)
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22 SET(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH}" "${CMAKE_CURRENT_SOURCE_DIR}/cmake-modules")
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23 ENABLE_TESTING()
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24 INCLUDE(CTest)
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25
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26 SET(CPACK_GENERATOR TGZ)
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27 SET(CPACK_PACKAGE_VERSION_MAJOR ${MINC2_PACKAGE_VERSION_MAJOR})
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28 SET(CPACK_PACKAGE_VERSION_MINOR ${MINC2_PACKAGE_VERSION_MINOR})
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29 SET(CPACK_PACKAGE_VERSION_PATCH ${MINC2_PACKAGE_VERSION_PATCH})
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30
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31 INCLUDE(CPack)
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32 ENDIF(NOT MINC_TOOLKIT_BUILD)
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33
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34 #ADD_SUBDIRECTORY( doc )
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35
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36 OPTION(MINC2_BUILD_V2 "Support minc2 file format" ON)
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37 OPTION(MINC2_BUILD_TOOLS "Build minc tools (mincreshape,mincresample, etc)" ON)
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38 OPTION(MINC2_BUILD_CONVERTERS "Build minc conversion programs (mnc2nii, nii2mnc , dcm2mnc...)" ON)
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39 OPTION(MINC2_BUILD_EZMINC "Build C++ interface library EZminc" ON)
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40 OPTION(MINC2_BUILD_SHARED_LIBS "Build minc2 with shared libraries." OFF)
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41
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42 IF(MINC2_BUILD_V2 AND NOT MINC_TOOLKIT_BUILD)
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43 IF(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
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44 IF(ITKHDF5_LOADED)
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45 SET(USE_ITK_HDF5 ON)
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46 ELSE(ITKHDF5_LOADED)
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47 SET(USE_ITK_HDF5 OFF)
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48 ENDIF(ITKHDF5_LOADED)
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49 ELSE(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
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50 SET(USE_ITK_HDF5 OFF)
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51 IF(ENABLE_SUPERBUILD)
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52 OPTION(USE_SYSTEM_HDF5 "Use System HDF5 > 1.8" ON)
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53 ELSE(ENABLE_SUPERBUILD)
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54 SET(USE_SYSTEM_HDF5 ON)
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55 ENDIF(ENABLE_SUPERBUILD)
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56 ENDIF(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
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57 ENDIF(BUILD_MINC2 AND NOT MINC_TOOLKIT_BUILD)
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58
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59 IF(BUILD_SHARED_LIBS)
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60 SET(LIBRARY_TYPE SHARED)
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61 SET(LIBRARY_INSTALL LIBRARY)
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62 ELSE(BUILD_SHARED_LIBS)
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63 SET(LIBRARY_TYPE STATIC)
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64 SET(LIBRARY_INSTALL ARCHIVE)
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65 ENDIF(BUILD_SHARED_LIBS)
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67
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68 # external packages
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69 IF(NOT MINC_TOOLKIT_BUILD)
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70 FIND_PACKAGE(NETCDF REQUIRED)
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71 ENDIF(NOT MINC_TOOLKIT_BUILD)
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72
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73
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74 IF(MINC2_BUILD_V2 AND NOT MINC_TOOLKIT_BUILD)
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75 IF(USE_ITK_HDF5)
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76 SET(HDF5_INCLUDE_DIR "${ITKHDF5_INCLUDE_DIRS}/itkhdf5") # a hack?
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77 SET(HDF5_LIBRARY ${ITKHDF5_LIBRARIES})
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78 SET(ZLIB_LIBRARIES ${ITKZLIB_LIBRARIES})
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79 ELSE(USE_ITK_HDF5)
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80 FIND_PACKAGE(ZLIB REQUIRED)
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81 FIND_PACKAGE(HDF5 REQUIRED)
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82 ENDIF(USE_ITK_HDF5)
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83
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84 IF(ZLIB_FOUND)
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85 SET(HAVE_ZLIB 1)
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86 ELSE(ZLIB_FOUND)
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87 FIND_PACKAGE(ZLIB)
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88 IF(ZLIB_FOUND)
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89 SET(HAVE_ZLIB 1)
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90 ENDIF(ZLIB_FOUND)
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91 ENDIF(ZLIB_FOUND)
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92 ENDIF(MINC2_BUILD_V2 AND NOT MINC_TOOLKIT_BUILD)
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93
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94 # add for building relocatable library
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95 IF(UNIX)
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96 SET(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -fPIC")
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97 SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC")
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98 ENDIF(UNIX)
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99
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100 # check for prereqs
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101 INCLUDE(CheckFunctionExists)
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102
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103 CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
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104 CHECK_FUNCTION_EXISTS(tmpnam HAVE_TMPNAM)
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105 CHECK_FUNCTION_EXISTS(tempnam HAVE_TEMPNAM)
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106 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
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107 CHECK_FUNCTION_EXISTS(popen HAVE_POPEN)
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108 CHECK_FUNCTION_EXISTS(fork HAVE_WORKING_FORK)
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109 CHECK_FUNCTION_EXISTS(vfork HAVE_WORKING_VFORK)
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110 CHECK_FUNCTION_EXISTS(fdopen HAVE_FDOPEN)
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111 CHECK_FUNCTION_EXISTS(strdup HAVE_STRDUP)
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112 CHECK_FUNCTION_EXISTS(getpwnam HAVE_GETPWNAM)
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113 CHECK_FUNCTION_EXISTS(select HAVE_SELECT)
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114 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
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115 CHECK_FUNCTION_EXISTS(sysconf HAVE_SYSCONF)
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116 CHECK_FUNCTION_EXISTS(system HAVE_SYSTEM)
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117
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118 INCLUDE(CheckIncludeFiles)
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119 CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
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120 CHECK_INCLUDE_FILES(sys/dir.h HAVE_SYS_DIR_H)
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121 CHECK_INCLUDE_FILES(sys/ndir.h HAVE_SYS_NDIR_H)
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122 CHECK_INCLUDE_FILES(sys/stat.h HAVE_SYS_STAT_H)
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123 CHECK_INCLUDE_FILES(sys/types.h HAVE_SYS_TYPES_H)
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124 CHECK_INCLUDE_FILES(sys/wait.h HAVE_SYS_WAIT_H)
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125 CHECK_INCLUDE_FILES(values.h HAVE_VALUES_H)
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126 CHECK_INCLUDE_FILES(unistd.h HAVE_UNISTD_H)
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127 CHECK_INCLUDE_FILES(dirent.h HAVE_DIRENT_H)
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128 CHECK_INCLUDE_FILES(memory.h HAVE_MEMORY_H)
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129 CHECK_INCLUDE_FILES(stdlib.h HAVE_STDLIB_H)
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130 CHECK_INCLUDE_FILES(fcntl.h HAVE_FCNTL_H)
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131 CHECK_INCLUDE_FILES(dlfcn.h HAVE_DLFCN_H)
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132 CHECK_INCLUDE_FILES(vfork.h HAVE_VFORK_H)
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133 CHECK_INCLUDE_FILES(inttypes.h HAVE_INTTYPES_H)
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134 CHECK_INCLUDE_FILES(string.h HAVE_STRING_H)
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135 CHECK_INCLUDE_FILES(strings.h HAVE_STRINGS_H)
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136 CHECK_INCLUDE_FILES(pwd.h HAVE_PWD_H)
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137
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138 ADD_DEFINITIONS(-DHAVE_CONFIG_H)
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139
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140 # aliases
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141 SET(VERSION "${PACKAGE_VERSION}")
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142
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143 IF(MINC2_BUILD_EZMINC)
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144 set(MINC2_INCLUDE_DIRS_CONFIG
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145 ${CMAKE_CURRENT_SOURCE_DIR}/ezminc
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146 )
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147 INCLUDE_DIRECTORIES(
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148 ${CMAKE_CURRENT_SOURCE_DIR}/ezminc
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149 )
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150 ENDIF(MINC2_BUILD_EZMINC)
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151
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152 # netcdf and HDF5
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153
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154 IF(MINC2_BUILD_V2)
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155 FIND_PACKAGE(ZLIB REQUIRED)
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156 SET(MINC2 "1")
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157 ELSE(BUILD_MINC2)
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158 SET(MINC2 "0")
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159 ENDIF(MINC2_BUILD_V2)
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160
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161 # config files for build
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162 CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.cmake ${CMAKE_CURRENT_BINARY_DIR}/config.h @ONLY)
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163
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164 # others
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165 CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/epm-header.in ${CMAKE_CURRENT_BINARY_DIR}/epm-header)
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166
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167 # set the master INCLUDE directories
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168 INCLUDE_DIRECTORIES(
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169 ${CMAKE_CURRENT_SOURCE_DIR}
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170 ${CMAKE_CURRENT_BINARY_DIR}
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171 ${CMAKE_CURRENT_SOURCE_DIR}/libsrc
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172 ${CMAKE_CURRENT_SOURCE_DIR}/volume_io/Include
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173 )
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174
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175 INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} )
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176
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177 IF(MINC2_BUILD_V2)
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178 INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR}/libsrc2 )
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179 ENDIF(MINC2_BUILD_V2)
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180
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181 # some variables
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182 SET(minc1_LIB_SRCS
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183 libsrc/ParseArgv.c
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184 libsrc/dim_conversion.c
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185 libsrc/image_conversion.c
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186 libsrc/minc_convenience.c
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187 libsrc/minc_error.c
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188 libsrc/nd_loop.c
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189 libsrc/netcdf_convenience.c
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190 libsrc/time_stamp.c
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191 libsrc/value_conversion.c
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192 libsrc/voxel_loop.c
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193 libsrc/hdf_convenience.c
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194 libsrc/minc_compat.c
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195 libsrc/minc_simple.c
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196 libsrc/read_file_names.c
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197 )
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198
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199 SET(minc1_HEADERS
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200 libsrc/minc.h
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201 libsrc/ParseArgv.h
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202 libsrc/voxel_loop.h
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203 libsrc/nd_loop.h
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204 libsrc/time_stamp.h
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205 libsrc/minc_compat.h
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206 volume_io/Include/volume_io.h
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207 libsrc/minc_simple.h
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208 )
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209
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210 SET(minc2_LIB_SRCS
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211 libsrc2/convert.c
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212 libsrc2/datatype.c
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213 libsrc2/dimension.c
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214 libsrc2/free.c
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215 libsrc2/grpattr.c
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216 libsrc2/hyper.c
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217 libsrc2/label.c
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218 libsrc2/m2util.c
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219 libsrc2/record.c
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220 libsrc2/slice.c
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221 libsrc2/valid.c
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222 libsrc2/volprops.c
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223 libsrc2/volume.c
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224 )
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225
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226 SET(minc2_HEADERS
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227 libsrc2/minc2.h
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228 )
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229
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230 # volume_io2
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231 SET(volume_io_LIB_SRCS
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232 volume_io/Geometry/colour.c
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233 volume_io/Geometry/colour_def.c
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234 volume_io/Geometry/gaussian.c
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235 volume_io/Geometry/inverse.c
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236 volume_io/Geometry/newton.c
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237 volume_io/Geometry/points.c
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238 volume_io/Geometry/splines.c
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239 volume_io/Geometry/tensors.c
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240 volume_io/Geometry/transforms.c
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241 volume_io/MNI_formats/gen_xf_io.c
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242 volume_io/MNI_formats/gen_xfs.c
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243 volume_io/MNI_formats/grid_transforms.c
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244 volume_io/MNI_formats/mni_io.c
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245 volume_io/MNI_formats/tag_points.c
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246 volume_io/MNI_formats/thin_plate_spline.c
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247 volume_io/Prog_utils/alloc.c
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248 volume_io/Prog_utils/alloc_check.c
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249 volume_io/Prog_utils/arrays.c
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250 volume_io/Prog_utils/files.c
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251 volume_io/Prog_utils/print.c
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252 volume_io/Prog_utils/progress.c
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253 volume_io/Prog_utils/string.c
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254 volume_io/Prog_utils/time.c
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255 volume_io/Volumes/evaluate.c
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256 volume_io/Volumes/get_hyperslab.c
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257 volume_io/Volumes/input_free.c
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258 volume_io/Volumes/input_mnc.c
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259 volume_io/Volumes/input_volume.c
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260 volume_io/Volumes/multidim_arrays.c
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261 volume_io/Volumes/output_mnc.c
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262 volume_io/Volumes/output_volume.c
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263 volume_io/Volumes/set_hyperslab.c
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264 volume_io/Volumes/volume_cache.c
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265 volume_io/Volumes/volumes.c
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266 )
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267
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268 SET(volume_io_HEADERS
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269 volume_io/Include/volume_io/alloc.h
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270 volume_io/Include/volume_io/arrays.h
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271 volume_io/Include/volume_io/basic.h
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272 volume_io/Include/volume_io/def_math.h
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273 volume_io/Include/volume_io/files.h
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274 volume_io/Include/volume_io/geom_structs.h
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275 volume_io/Include/volume_io/geometry.h
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276 volume_io/Include/internal_volume_io.h
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277 volume_io/Include/volume_io/multidim.h
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278 volume_io/Include/volume_io/progress.h
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279 volume_io/Include/volume_io/string_funcs.h
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280 volume_io/Include/volume_io/system_dependent.h
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281 volume_io/Include/volume_io/transforms.h
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282 volume_io/Include/volume_io/vol_io_prototypes.h
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283 volume_io/Include/volume_io/volume.h
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284 volume_io/Include/volume_io/volume_cache.h
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285 )
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286
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287 SET(MINC2_LIBRARY minc)
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288 SET(VOLUME_IO_LIBRARY volume_io)
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289
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290 SET(MINC2_LIBRARIES ${MINC2_LIBRARY} ${NETCDF_LIBRARY})
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291
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292 SET(MINC2_DEPENDENCIES "")
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293
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294 # IF(NOT USE_SYSTEM_NETCDF)
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295 # SET(MINC2_DEPENDENCIES ${MINC2_DEPENDENCIES} NETCDF)
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296 # ENDIF(NOT USE_SYSTEM_NETCDF)
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297
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298
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299 IF(MINC2_BUILD_V2)
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300 INCLUDE_DIRECTORIES( ${HDF5_INCLUDE_DIR} )
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301
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302 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
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303 SET(minc_HEADERS ${minc1_HEADERS} ${minc2_HEADERS})
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304 SET(MINC2_LIBRARY minc2)
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305 SET(MINC2_LIBRARIES ${MINC2_LIBRARY} ${HDF5_LIBRARY} ${NETCDF_LIBRARY} ${ZLIB_LIBRARIES} m )
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306
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307 SET(VOLUME_IO_LIBRARY volume_io2)
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308
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309 IF(NOT USE_SYSTEM_HDF5)
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310 SET(MINC2_DEPENDENCIES ${MINC2_DEPENDENCIES} HDF5)
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311 ENDIF(NOT USE_SYSTEM_HDF5)
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312 ELSE(MINC2_BUILD_V2)
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313 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} )
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314 SET(minc_HEADERS ${minc1_HEADERS} ${minc2_HEADERS})
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315 ENDIF(MINC2_BUILD_V2)
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316
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317
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318 ADD_LIBRARY(${MINC2_LIBRARY} ${LIBRARY_TYPE} ${minc_LIB_SRCS} )
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319 TARGET_LINK_LIBRARIES(${MINC2_LIBRARY} ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
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320
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321 ADD_LIBRARY(${VOLUME_IO_LIBRARY} ${LIBRARY_TYPE} ${volume_io_LIB_SRCS})
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322
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323 SET_TARGET_PROPERTIES(${MINC2_LIBRARY} PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${MINC2_PACKAGE_VERSION_MAJOR})
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324 SET_TARGET_PROPERTIES(${VOLUME_IO_LIBRARY} PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${MINC2_PACKAGE_VERSION_MAJOR})
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325
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326 ADD_DEPENDENCIES(${MINC2_LIBRARY} ${MINC2_DEPENDENCIES})
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327 ADD_DEPENDENCIES(${VOLUME_IO_LIBRARY} ${MINC2_LIBRARY})
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328
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329 INSTALL(TARGETS ${MINC2_LIBRARY} ${LIBRARY_INSTALL} DESTINATION lib)
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330 INSTALL(TARGETS ${VOLUME_IO_LIBRARY} ${LIBRARY_INSTALL} DESTINATION lib)
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331 INSTALL(FILES ${minc2_HEADERS} DESTINATION include )
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332 INSTALL(FILES ${volume_io_HEADERS} DESTINATION include/volume_io)
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333
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334 IF(MINC2_BUILD_TOOLS)
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335 ADD_SUBDIRECTORY( progs )
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336 ENDIF(BUILD_TOOLS)
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337
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338 IF(MINC2_BUILD_CONVERTERS)
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339 ADD_SUBDIRECTORY( conversion )
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340 ENDIF(BUILD_CONVERTERS)
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341
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342 IF(MINC2_BUILD_EZMINC)
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343 ADD_SUBDIRECTORY( ezminc )
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344 ENDIF(BUILD_EZMINC)
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345
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346 # config for the build directory
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347 set(MINC2_USE_FILE_CONFIG ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake)
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348
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349 set(MINC2_INCLUDE_DIRS_CONFIG
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350 ${CMAKE_CURRENT_SOURCE_DIR}
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351 ${CMAKE_CURRENT_SOURCE_DIR}/libsrc
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352 ${CMAKE_CURRENT_SOURCE_DIR}/volume_io/Include
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353 )
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354
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355 IF(MINC2_BUILD_V2)
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356 set(MINC2_INCLUDE_DIRS_CONFIG
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357 ${MINC2_INCLUDE_DIRS_CONFIG}
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358 ${CMAKE_CURRENT_SOURCE_DIR}/libsrc2
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359 )
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360 ENDIF(MINC2_BUILD_V2)
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361
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362 IF(MINC2_BUILD_EZMINC)
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363 SET(EZMINC_LIBRARIES minc_io ${MINC2_LIBRARIES})
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364 ENDIF(MINC2_BUILD_EZMINC)
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365
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366 set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_CURRENT_BINARY_DIR})
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367
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368 configure_file(MINC2Config.cmake.in
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369 ${CMAKE_CURRENT_BINARY_DIR}/MINC2Config.cmake @ONLY )
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370
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371 configure_file(UseMINC2.cmake.in
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372 ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake @ONLY)
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373
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374 # config for install dir
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375 set(MINC2_USE_FILE_CONFIG "${CMAKE_INSTALL_PREFIX}/lib/UseMINC2.cmake")
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376
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377 set(MINC2_INCLUDE_DIRS_CONFIG
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378 ${CMAKE_INSTALL_PREFIX}/include
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379 )
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380
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381 set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_INSTALL_PREFIX}/lib)
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382
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383 configure_file(MINC2Config.cmake.in
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384 ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake @ONLY )
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385
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386 configure_file(UseMINC2.cmake.in
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387 ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake @ONLY)
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388
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389 INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake
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390 DESTINATION lib
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391 COMPONENT Development)
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392 # testing
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393
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394 IF(BUILD_TESTING)
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395 ADD_SUBDIRECTORY( testdir )
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396 ENDIF(BUILD_TESTING)