Mercurial > hg > minc-tools

annotate CMakeLists.txt @ 2553:0b52afea4248

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integrated ezminc building....
author Vladimir S. FONOV <vladimir.fonov@gmail.com>
date Thu, 08 Dec 2011 18:51:19 -0500
parents 345f8c960657
children 425fa26827ab
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1 # CMakeFiles.txt for the MINC2 library
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2 #
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3 # Andrew Janke - a.janke@gmail.com
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4
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5 CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
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6
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7 PROJECT(libminc2)
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8
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9 SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake-modules")
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11
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12 #ADD_SUBDIRECTORY( testdir )
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13 #ADD_SUBDIRECTORY( doc )
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15
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16 # Packaging defines
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17 SET(CPACK_GENERATOR TGZ)
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18 SET(CPACK_PACKAGE_VERSION_MAJOR 2)
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19 SET(CPACK_PACKAGE_VERSION_MINOR 1)
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20 SET(CPACK_PACKAGE_VERSION_PATCH 1)
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21 INCLUDE(CPack)
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22
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23
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24 SET(PACKAGE "minc")
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25 SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
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26
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27 SET(PACKAGE_NAME "minc")
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28 SET(PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
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29 SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
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30
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31 OPTION(BUILD_MINC2 "Support minc2 file format" ON)
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32 OPTION(BUILD_TOOLS "Build minc tools (mincreshape,mincresample, etc)" ON)
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33 OPTION(BUILD_CONVERTERS "Build minc conversion programs (mnc2nii, nii2mnc , dcm2mnc...)" ON)
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34 OPTION(BUILD_EZMINC "Build C++ interface library EZminc" ON)
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36 ADD_DEFINITIONS(-DHAVE_CONFIG_H)
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37
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38 # aliases
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39 SET(VERSION "${PACKAGE_VERSION}")
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40
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41 # check for prereqs
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42 INCLUDE(CheckFunctionExists)
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43
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44 CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
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45 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
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46
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47 INCLUDE(CheckIncludeFiles)
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48 CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
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50 # netcdf and HDF5
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51 FIND_PACKAGE(NETCDF REQUIRED)
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52 INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} )
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53
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54 IF(BUILD_MINC2)
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55 FIND_PACKAGE(HDF5 REQUIRED)
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56 FIND_PACKAGE(ZLIB REQUIRED)
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57 SET(MINC2 "1")
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58 INCLUDE_DIRECTORIES( ${HDF5_INCLUDE_DIR} )
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59 ENDIF(BUILD_MINC2)
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60
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61 # config files for build
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62 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/config.h.cmake ${CMAKE_SOURCE_DIR}/config.h)
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63
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64 # others
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65 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/epm-header.in ${CMAKE_SOURCE_DIR}/epm-header)
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66
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67 # set the master INCLUDE directories
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68 INCLUDE_DIRECTORIES(
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69 ${CMAKE_CURRENT_SOURCE_DIR}
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70 ${CMAKE_SOURCE_DIR}/libsrc
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71 ${CMAKE_SOURCE_DIR}/volume_io/Include
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72 )
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73
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74 IF(BUILD_MINC2)
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75 INCLUDE_DIRECTORIES(
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76 ${CMAKE_SOURCE_DIR}/libsrc2
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77 )
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78 ENDIF(BUILD_MINC2)
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79
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80
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81 # some variables
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82 SET(minc1_LIB_SRCS
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83 libsrc/ParseArgv.c
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84 libsrc/dim_conversion.c
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85 libsrc/image_conversion.c
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86 libsrc/minc_convenience.c
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87 libsrc/minc_error.c
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88 libsrc/nd_loop.c
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89 libsrc/netcdf_convenience.c
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90 libsrc/time_stamp.c
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91 libsrc/value_conversion.c
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92 libsrc/voxel_loop.c
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93 libsrc/hdf_convenience.c
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94 libsrc/minc_compat.c
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95 libsrc/minc_simple.c
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96 )
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97
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98 SET(minc2_LIB_SRCS
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99 libsrc2/convert.c
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100 libsrc2/datatype.c
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101 libsrc2/dimension.c
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102 libsrc2/free.c
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103 libsrc2/grpattr.c
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104 libsrc2/hyper.c
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105 libsrc2/label.c
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106 libsrc2/m2util.c
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107 libsrc2/record.c
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108 libsrc2/slice.c
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109 libsrc2/valid.c
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110 libsrc2/volprops.c
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111 libsrc2/volume.c
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112 )
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113
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114 SET(minc_LIB minc)
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115
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116 IF(BUILD_MINC2)
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117 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
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118 SET(minc_LIB minc2)
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119 ADD_LIBRARY(minc2 STATIC ${minc_LIB_SRCS} )
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120
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121 TARGET_LINK_LIBRARIES(minc2 ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
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123 INSTALL(TARGETS minc2 ARCHIVE DESTINATION lib)
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124
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125 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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126 libsrc/voxel_loop.h
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127 libsrc/nd_loop.h
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128 libsrc/time_stamp.h
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129 libsrc/minc_compat.h
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130 volume_io/Include/volume_io.h
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131 libsrc2/minc2.h
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132 libsrc/minc_simple.h
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133 DESTINATION include
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134 )
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135
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136 SET_TARGET_PROPERTIES(minc2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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137
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138 ELSE(BUILD_MINC2)
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139
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140 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} )
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141 SET(minc_LIB minc)
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142 ADD_LIBRARY(minc STATIC ${minc1_LIB_SRCS} )
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143 TARGET_LINK_LIBRARIES(minc ${NETCDF_LIBRARY} )
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144 INSTALL(TARGETS minc ARCHIVE DESTINATION lib)
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145
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146 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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147 libsrc/voxel_loop.h
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148 libsrc/nd_loop.h
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149 libsrc/time_stamp.h
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150 libsrc/minc_compat.h
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151 volume_io/Include/volume_io.h
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152 libsrc/minc_simple.h
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153 DESTINATION include
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154 )
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155
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156 SET_TARGET_PROPERTIES(minc PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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157
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158 ENDIF(BUILD_MINC2)
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159
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160 # build the main minc2 library
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161
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162 # volume_io2
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163 SET(volume_io_LIB_SRCS
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164 volume_io/Geometry/colour.c
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165 volume_io/Geometry/colour_def.c
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166 volume_io/Geometry/gaussian.c
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167 volume_io/Geometry/inverse.c
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168 volume_io/Geometry/newton.c
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169 volume_io/Geometry/points.c
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170 volume_io/Geometry/splines.c
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171 volume_io/Geometry/tensors.c
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172 volume_io/Geometry/transforms.c
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173 volume_io/MNI_formats/gen_xf_io.c
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174 volume_io/MNI_formats/gen_xfs.c
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175 volume_io/MNI_formats/grid_transforms.c
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176 volume_io/MNI_formats/mni_io.c
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177 volume_io/MNI_formats/tag_points.c
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178 volume_io/MNI_formats/thin_plate_spline.c
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179 volume_io/Prog_utils/alloc.c
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180 volume_io/Prog_utils/alloc_check.c
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181 volume_io/Prog_utils/arrays.c
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182 volume_io/Prog_utils/files.c
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183 volume_io/Prog_utils/print.c
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184 volume_io/Prog_utils/progress.c
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185 volume_io/Prog_utils/string.c
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186 volume_io/Prog_utils/time.c
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187 volume_io/Volumes/evaluate.c
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188 volume_io/Volumes/get_hyperslab.c
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189 volume_io/Volumes/input_free.c
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190 volume_io/Volumes/input_mnc.c
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191 volume_io/Volumes/input_volume.c
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192 volume_io/Volumes/multidim_arrays.c
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193 volume_io/Volumes/output_mnc.c
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194 volume_io/Volumes/output_volume.c
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195 volume_io/Volumes/set_hyperslab.c
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196 volume_io/Volumes/volume_cache.c
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197 volume_io/Volumes/volumes.c
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198 )
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199
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200 IF(BUILD_MINC2)
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201 # build and install volume_io2 library
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202 ADD_LIBRARY(volume_io2 STATIC ${volume_io_LIB_SRCS})
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203 INSTALL(TARGETS volume_io2 ARCHIVE DESTINATION lib)
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204 SET_TARGET_PROPERTIES(volume_io2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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205 SET( volume_io_LIB volume_io2)
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206
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207 ELSE(BUILD_MINC2)
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208 ADD_LIBRARY(volume_io STATIC ${volume_io_LIB_SRCS})
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209 INSTALL(TARGETS volume_io ARCHIVE DESTINATION lib)
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210 SET_TARGET_PROPERTIES(volume_io PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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211 SET( volume_io_LIB volume_io)
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212 ENDIF(BUILD_MINC2)
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213
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214 INSTALL(FILES volume_io/Include/volume_io/alloc.h
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215 volume_io/Include/volume_io/arrays.h
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216 volume_io/Include/volume_io/basic.h
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217 volume_io/Include/volume_io/def_math.h
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218 volume_io/Include/volume_io/files.h
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219 volume_io/Include/volume_io/geom_structs.h
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220 volume_io/Include/volume_io/geometry.h
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221 volume_io/Include/internal_volume_io.h
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222 volume_io/Include/volume_io/multidim.h
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223 volume_io/Include/volume_io/progress.h
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224 volume_io/Include/volume_io/string_funcs.h
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225 volume_io/Include/volume_io/system_dependent.h
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226 volume_io/Include/volume_io/transforms.h
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227 volume_io/Include/volume_io/vol_io_prototypes.h
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228 volume_io/Include/volume_io/volume.h
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229 volume_io/Include/volume_io/volume_cache.h
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230 DESTINATION include/volume_io)
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231
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232 IF(BUILD_TOOLS)
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233 # now build the progs subdir
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234 ADD_SUBDIRECTORY( progs )
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235 ENDIF(BUILD_TOOLS)
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236
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237 IF(BUILD_CONVERTERS)
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238 # and then the conversion subdir
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239 ADD_SUBDIRECTORY( conversion )
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240 ENDIF(BUILD_CONVERTERS)
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241
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242 IF(BUILD_EZMINC)
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243 ADD_SUBDIRECTORY( ezminc )
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244 ENDIF(BUILD_EZMINC)