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annotate CMakeLists.txt @ 2476:be77e1e3845c

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* CMakeLists.txt: updated version * Updated Changelog to include releases * Warning cleanups below * conversion/dcm2mnc/minc_file.c: fixed printf type * conversion/dcm2mnc/siemens_to_dicom.c: fixed printf type * conversion/ecattominc/machine_indep.c: added string.h and fixed 2 fprintf missing format args * conversion/micropet/upet2mnc.c: fixed two fprintf format args * conversion/minctoecat/ecat_write.c: added string.h * conversion/minctoecat/minctoecat.c: added missing argument to fprintf * conversion/nifti1/mnc2nii.c: fixed incorrect printf type * progs/mincview/invert_raw_image.c: added fwrite checking
author rotor <rotor>
date Tue, 20 Jan 2009 11:58:13 +0000
parents e30fdeeb284c
children 0cf5f64c9d19
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1 # CMakeFiles.txt for the MINC2 library
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2 #
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3 # Andrew Janke - a.janke@gmail.com
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4
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5 PROJECT(libminc2)
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6
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7 SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake-modules")
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8
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9
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10 #ADD_SUBDIRECTORY( testdir )
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11 #ADD_SUBDIRECTORY( doc )
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12
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13
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14 # Packaging defines
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15 SET(CPACK_GENERATOR TGZ)
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16 SET(CPACK_PACKAGE_VERSION_MAJOR 2)
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17 SET(CPACK_PACKAGE_VERSION_MINOR 0)
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18 SET(CPACK_PACKAGE_VERSION_PATCH 17)
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19 INCLUDE(CPack)
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20
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21
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22 SET(PACKAGE "minc")
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23 SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
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24
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25 SET(PACKAGE_NAME "minc")
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26 SET(PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
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27 SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
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28
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29
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30 # yes, build as minc2
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31 SET(MINC2 "1")
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32 ADD_DEFINITIONS(-DHAVE_CONFIG_H)
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33
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34 # aliases
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35 SET(VERSION "${PACKAGE_VERSION}")
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36
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37 # progs needed to build
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38 #SET(FLEX_FIND_REQUIRED)
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39 #SET(BISON_FIND_REQUIRED)
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40 #FIND_PACKAGE(BISON)
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41 #FIND_PACKAGE(FLEX)
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42
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43 # check for prereqs
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44 INCLUDE(CheckFunctionExists)
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45
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46 CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
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47 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
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48
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49 INCLUDE(CheckIncludeFiles)
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50 CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
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51
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52 # netcdf and HDF5
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53 SET(NETCDF_FIND_REQUIRED TRUE)
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54 SET(HDF5_FIND_REQUIRED TRUE)
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55 FIND_PACKAGE(HDF5)
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56 FIND_PACKAGE(NETCDF)
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57 INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} ${HDF5_INCLUDE_DIR} )
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58
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59 # config files for build
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60 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/config.h.cmake ${CMAKE_SOURCE_DIR}/config.h)
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61
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62 # others
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63 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/epm-header.in ${CMAKE_SOURCE_DIR}/epm-header)
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64
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65 # set the master INCLUDE directories
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66 INCLUDE_DIRECTORIES(
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67 ${CMAKE_CURRENT_SOURCE_DIR}
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68 ${CMAKE_SOURCE_DIR}/libsrc
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69 ${CMAKE_SOURCE_DIR}/libsrc2
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70 ${CMAKE_SOURCE_DIR}/volume_io/Include
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71 )
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72
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73 # some variables
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74 SET(minc1_LIB_SRCS
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75 libsrc/ParseArgv.c
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76 libsrc/dim_conversion.c
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77 libsrc/image_conversion.c
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78 libsrc/minc_convenience.c
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79 libsrc/minc_error.c
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80 libsrc/nd_loop.c
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81 libsrc/netcdf_convenience.c
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82 libsrc/time_stamp.c
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83 libsrc/value_conversion.c
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84 libsrc/voxel_loop.c
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85 libsrc/hdf_convenience.c
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86 libsrc/minc_compat.c
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87 libsrc/minc_simple.c
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88 )
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89
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90 SET(minc2_LIB_SRCS
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91 libsrc2/convert.c
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92 libsrc2/datatype.c
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93 libsrc2/dimension.c
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94 libsrc2/free.c
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95 libsrc2/grpattr.c
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96 libsrc2/hyper.c
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97 libsrc2/label.c
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98 libsrc2/m2util.c
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99 libsrc2/record.c
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100 libsrc2/slice.c
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101 libsrc2/valid.c
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102 libsrc2/volprops.c
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103 libsrc2/volume.c
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104 )
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105
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106
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107 # build the main minc2 library
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108 ADD_LIBRARY(minc2 STATIC ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
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109 INSTALL(TARGETS minc2 DESTINATION lib)
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110 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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111 libsrc/voxel_loop.h
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112 libsrc/nd_loop.h
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113 libsrc/time_stamp.h
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114 libsrc/minc_compat.h
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115 volume_io/Include/volume_io.h
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116 libsrc2/minc2.h
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117 libsrc/minc_simple.h
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118 DESTINATION include
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119 )
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120
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121 SET_TARGET_PROPERTIES(minc2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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122
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123
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124 # volume_io2
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125 SET(volume_io2_LIB_SRCS
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126 volume_io/Geometry/colour.c
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127 volume_io/Geometry/colour_def.c
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128 volume_io/Geometry/gaussian.c
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129 volume_io/Geometry/inverse.c
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130 volume_io/Geometry/newton.c
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131 volume_io/Geometry/points.c
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132 volume_io/Geometry/splines.c
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133 volume_io/Geometry/tensors.c
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134 volume_io/Geometry/transforms.c
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135 volume_io/MNI_formats/gen_xf_io.c
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136 volume_io/MNI_formats/gen_xfs.c
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137 volume_io/MNI_formats/grid_transforms.c
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138 volume_io/MNI_formats/mni_io.c
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139 volume_io/MNI_formats/tag_points.c
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140 volume_io/MNI_formats/thin_plate_spline.c
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141 volume_io/Prog_utils/alloc.c
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142 volume_io/Prog_utils/alloc_check.c
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143 volume_io/Prog_utils/arrays.c
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144 volume_io/Prog_utils/files.c
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145 volume_io/Prog_utils/print.c
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146 volume_io/Prog_utils/progress.c
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147 volume_io/Prog_utils/string.c
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148 volume_io/Prog_utils/time.c
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149 volume_io/Volumes/evaluate.c
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150 volume_io/Volumes/get_hyperslab.c
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151 volume_io/Volumes/input_free.c
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152 volume_io/Volumes/input_mnc.c
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153 volume_io/Volumes/input_volume.c
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154 volume_io/Volumes/multidim_arrays.c
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155 volume_io/Volumes/output_mnc.c
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156 volume_io/Volumes/output_volume.c
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157 volume_io/Volumes/set_hyperslab.c
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158 volume_io/Volumes/volume_cache.c
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159 volume_io/Volumes/volumes.c
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160 )
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161
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162 # build and install volume_io2 library
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163 ADD_LIBRARY(volume_io2 STATIC ${volume_io2_LIB_SRCS})
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164 INSTALL(TARGETS volume_io2 DESTINATION lib)
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165 INSTALL(FILES volume_io/Include/volume_io/alloc.h
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166 volume_io/Include/volume_io/arrays.h
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167 volume_io/Include/volume_io/basic.h
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168 volume_io/Include/volume_io/def_math.h
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169 volume_io/Include/volume_io/files.h
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170 volume_io/Include/volume_io/geom_structs.h
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171 volume_io/Include/volume_io/geometry.h
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172 volume_io/Include/internal_volume_io.h
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173 volume_io/Include/volume_io/multidim.h
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174 volume_io/Include/volume_io/progress.h
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175 volume_io/Include/volume_io/string_funcs.h
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176 volume_io/Include/volume_io/system_dependent.h
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177 volume_io/Include/volume_io/transforms.h
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178 volume_io/Include/volume_io/vol_io_prototypes.h
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179 volume_io/Include/volume_io/volume.h
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180 volume_io/Include/volume_io/volume_cache.h
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181 DESTINATION include/volume_io)
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182
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183 SET_TARGET_PROPERTIES(volume_io2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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184
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185
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186 # now build the progs subdir
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187 ADD_SUBDIRECTORY( progs )
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188
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189
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190 # and then the conversion subdir
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191 ADD_SUBDIRECTORY( conversion )
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192