Mercurial > hg > minc-tools

annotate CMakeLists.txt @ 2551:3fe122bac48b

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added option not to build tools and converters
author Vladimir S. FONOV <vladimir.fonov@gmail.com>
date Thu, 08 Dec 2011 18:41:27 -0500
parents 1a69a4b622eb
children 345f8c960657
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1 # CMakeFiles.txt for the MINC2 library
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2 #
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3 # Andrew Janke - a.janke@gmail.com
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4
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5 CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
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6
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7 PROJECT(libminc2)
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8
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9 SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake-modules")
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11
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12 #ADD_SUBDIRECTORY( testdir )
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13 #ADD_SUBDIRECTORY( doc )
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15
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16 # Packaging defines
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17 SET(CPACK_GENERATOR TGZ)
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18 SET(CPACK_PACKAGE_VERSION_MAJOR 2)
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19 SET(CPACK_PACKAGE_VERSION_MINOR 1)
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20 SET(CPACK_PACKAGE_VERSION_PATCH 1)
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21 INCLUDE(CPack)
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22
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24 SET(PACKAGE "minc")
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25 SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
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26
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27 SET(PACKAGE_NAME "minc")
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28 SET(PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
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29 SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
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30
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31 OPTION(BUILD_MINC2 "Support minc2 file format" ON)
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32 OPTION(BUILD_TOOLS "Build minc tools (mincreshape,mincresample, etc)" ON)
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33 OPTION(BUILD_CONVERTERS "Build minc conversion programs (mnc2nii, nii2mnc , dcm2mnc...)" ON)
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35 ADD_DEFINITIONS(-DHAVE_CONFIG_H)
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36
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37 # aliases
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38 SET(VERSION "${PACKAGE_VERSION}")
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39
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40 # check for prereqs
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41 INCLUDE(CheckFunctionExists)
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42
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43 CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
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44 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
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45
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46 INCLUDE(CheckIncludeFiles)
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47 CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
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48
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49 # netcdf and HDF5
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50 FIND_PACKAGE(NETCDF REQUIRED)
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51 INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} )
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52
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53 IF(BUILD_MINC2)
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54 FIND_PACKAGE(HDF5 REQUIRED)
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55 FIND_PACKAGE(ZLIB REQUIRED)
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56 SET(MINC2 "1")
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57 INCLUDE_DIRECTORIES( ${HDF5_INCLUDE_DIR} )
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58 ENDIF(BUILD_MINC2)
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59
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60 # config files for build
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61 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/config.h.cmake ${CMAKE_SOURCE_DIR}/config.h)
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62
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63 # others
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64 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/epm-header.in ${CMAKE_SOURCE_DIR}/epm-header)
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65
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66 # set the master INCLUDE directories
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67 INCLUDE_DIRECTORIES(
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68 ${CMAKE_CURRENT_SOURCE_DIR}
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69 ${CMAKE_SOURCE_DIR}/libsrc
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70 ${CMAKE_SOURCE_DIR}/volume_io/Include
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71 )
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72
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73 IF(BUILD_MINC2)
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74 INCLUDE_DIRECTORIES(
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75 ${CMAKE_SOURCE_DIR}/libsrc2
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76 )
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77 ENDIF(BUILD_MINC2)
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78
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79
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80 # some variables
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81 SET(minc1_LIB_SRCS
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82 libsrc/ParseArgv.c
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83 libsrc/dim_conversion.c
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84 libsrc/image_conversion.c
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85 libsrc/minc_convenience.c
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86 libsrc/minc_error.c
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87 libsrc/nd_loop.c
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88 libsrc/netcdf_convenience.c
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89 libsrc/time_stamp.c
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90 libsrc/value_conversion.c
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91 libsrc/voxel_loop.c
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92 libsrc/hdf_convenience.c
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93 libsrc/minc_compat.c
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94 libsrc/minc_simple.c
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95 )
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96
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97 SET(minc2_LIB_SRCS
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98 libsrc2/convert.c
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99 libsrc2/datatype.c
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100 libsrc2/dimension.c
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101 libsrc2/free.c
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102 libsrc2/grpattr.c
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103 libsrc2/hyper.c
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104 libsrc2/label.c
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105 libsrc2/m2util.c
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106 libsrc2/record.c
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107 libsrc2/slice.c
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108 libsrc2/valid.c
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109 libsrc2/volprops.c
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110 libsrc2/volume.c
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111 )
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112
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113 SET(minc_LIB minc)
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114
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115 IF(BUILD_MINC2)
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116 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
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117 SET(minc_LIB minc2)
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118 ADD_LIBRARY(minc2 STATIC ${minc_LIB_SRCS} )
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119
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120 TARGET_LINK_LIBRARIES(minc2 ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
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121
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122 INSTALL(TARGETS minc2 DESTINATION lib)
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123
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124 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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125 libsrc/voxel_loop.h
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126 libsrc/nd_loop.h
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127 libsrc/time_stamp.h
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128 libsrc/minc_compat.h
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129 volume_io/Include/volume_io.h
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130 libsrc2/minc2.h
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131 libsrc/minc_simple.h
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132 DESTINATION include
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133 )
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134
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135 SET_TARGET_PROPERTIES(minc2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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136
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137 ELSE(BUILD_MINC2)
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138
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139 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} )
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140 SET(minc_LIB minc)
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141 ADD_LIBRARY(minc STATIC ${minc1_LIB_SRCS} )
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142 TARGET_LINK_LIBRARIES(minc ${NETCDF_LIBRARY} )
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143 INSTALL(TARGETS minc DESTINATION lib)
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144
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145 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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146 libsrc/voxel_loop.h
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147 libsrc/nd_loop.h
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148 libsrc/time_stamp.h
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149 libsrc/minc_compat.h
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150 volume_io/Include/volume_io.h
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151 libsrc/minc_simple.h
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152 DESTINATION include
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153 )
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154
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155 SET_TARGET_PROPERTIES(minc PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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156
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157 ENDIF(BUILD_MINC2)
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158
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159 # build the main minc2 library
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160
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161 # volume_io2
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162 SET(volume_io_LIB_SRCS
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163 volume_io/Geometry/colour.c
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164 volume_io/Geometry/colour_def.c
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165 volume_io/Geometry/gaussian.c
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166 volume_io/Geometry/inverse.c
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167 volume_io/Geometry/newton.c
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168 volume_io/Geometry/points.c
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169 volume_io/Geometry/splines.c
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170 volume_io/Geometry/tensors.c
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171 volume_io/Geometry/transforms.c
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172 volume_io/MNI_formats/gen_xf_io.c
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173 volume_io/MNI_formats/gen_xfs.c
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174 volume_io/MNI_formats/grid_transforms.c
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175 volume_io/MNI_formats/mni_io.c
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176 volume_io/MNI_formats/tag_points.c
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177 volume_io/MNI_formats/thin_plate_spline.c
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178 volume_io/Prog_utils/alloc.c
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179 volume_io/Prog_utils/alloc_check.c
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180 volume_io/Prog_utils/arrays.c
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181 volume_io/Prog_utils/files.c
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182 volume_io/Prog_utils/print.c
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183 volume_io/Prog_utils/progress.c
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184 volume_io/Prog_utils/string.c
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185 volume_io/Prog_utils/time.c
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186 volume_io/Volumes/evaluate.c
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187 volume_io/Volumes/get_hyperslab.c
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188 volume_io/Volumes/input_free.c
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189 volume_io/Volumes/input_mnc.c
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190 volume_io/Volumes/input_volume.c
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191 volume_io/Volumes/multidim_arrays.c
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192 volume_io/Volumes/output_mnc.c
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193 volume_io/Volumes/output_volume.c
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194 volume_io/Volumes/set_hyperslab.c
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195 volume_io/Volumes/volume_cache.c
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196 volume_io/Volumes/volumes.c
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197 )
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198
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199 IF(BUILD_MINC2)
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200 # build and install volume_io2 library
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201 ADD_LIBRARY(volume_io2 STATIC ${volume_io_LIB_SRCS})
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202 INSTALL(TARGETS volume_io2 DESTINATION lib)
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203 SET_TARGET_PROPERTIES(volume_io2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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204 SET( volume_io_LIB volume_io2)
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205
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206 ELSE(BUILD_MINC2)
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207 ADD_LIBRARY(volume_io STATIC ${volume_io_LIB_SRCS})
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208 INSTALL(TARGETS volume_io DESTINATION lib)
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209 SET_TARGET_PROPERTIES(volume_io PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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210 SET( volume_io_LIB volume_io)
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211 ENDIF(BUILD_MINC2)
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212
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213 INSTALL(FILES volume_io/Include/volume_io/alloc.h
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214 volume_io/Include/volume_io/arrays.h
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215 volume_io/Include/volume_io/basic.h
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216 volume_io/Include/volume_io/def_math.h
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217 volume_io/Include/volume_io/files.h
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218 volume_io/Include/volume_io/geom_structs.h
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219 volume_io/Include/volume_io/geometry.h
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220 volume_io/Include/internal_volume_io.h
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221 volume_io/Include/volume_io/multidim.h
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222 volume_io/Include/volume_io/progress.h
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223 volume_io/Include/volume_io/string_funcs.h
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224 volume_io/Include/volume_io/system_dependent.h
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225 volume_io/Include/volume_io/transforms.h
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226 volume_io/Include/volume_io/vol_io_prototypes.h
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227 volume_io/Include/volume_io/volume.h
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228 volume_io/Include/volume_io/volume_cache.h
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229 DESTINATION include/volume_io)
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230
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231 IF(BUILD_TOOLS)
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232 # now build the progs subdir
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233 ADD_SUBDIRECTORY( progs )
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234 ENDIF(BUILD_TOOLS)
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235
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236 IF(BUILD_CONVERTERS)
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237 # and then the conversion subdir
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238 ADD_SUBDIRECTORY( conversion )
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239 ENDIF(BUILD_CONVERTERS)