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annotate CMakeLists.txt @ 2574:bba21faaef13

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making a super build
author Vladimir Fonov <vladimir.fonov@gmail.com>
date Wed, 18 Jan 2012 15:58:47 +0800
parents 84714ccca340
children f96c8a022cf6
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1 # CMakeFiles.txt for the MINC2 library
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2 #
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3 # Andrew Janke - a.janke@gmail.com
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4 # Vladimir S. FONOV - vladimir.fonov@gmail.com
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5
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6 CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
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7 INCLUDE(ExternalProject)
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8
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9 PROJECT(minc2)
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10
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11 #SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake-modules")
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12 ENABLE_TESTING()
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13 INCLUDE(CTest)
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14
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15 #ADD_SUBDIRECTORY( doc )
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17
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18 # Packaging defines
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19 SET(CPACK_GENERATOR TGZ)
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20 SET(CPACK_PACKAGE_VERSION_MAJOR 2)
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21 SET(CPACK_PACKAGE_VERSION_MINOR 1)
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22 SET(CPACK_PACKAGE_VERSION_PATCH 1)
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23 INCLUDE(CPack)
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24
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25
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26 SET(PACKAGE "minc2")
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27 SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
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28
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29 SET(PACKAGE_NAME "minc2")
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30 SET(PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
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31 SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
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32
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33 OPTION(BUILD_MINC2 "Support minc2 file format" ON)
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34 OPTION(BUILD_TOOLS "Build minc tools (mincreshape,mincresample, etc)" ON)
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35 OPTION(BUILD_CONVERTERS "Build minc conversion programs (mnc2nii, nii2mnc , dcm2mnc...)" ON)
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36 OPTION(BUILD_EZMINC "Build C++ interface library EZminc" ON)
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37
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38 OPTION(USE_SYSTEM_NETCDF "Use System NETCDF > 3.6.3" OFF)
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39
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40 IF(BUILD_EZMINC)
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41 OPTION(BUILD_MINC4ITK "Build ITK interface" ON)
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42 ENDIF(BUILD_EZMINC)
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43
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44 IF(BUILD_MINC2)
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45 OPTION(USE_SYSTEM_HDF5 "Use System HDF5 > 1.8 " OFF)
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46 ENDIF(BUILD_MINC2)
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47
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48
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49
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50 # external packages
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51 IF(USE_SYSTEM_NETCDF)
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52 FIND_PACKAGE(NETCDF REQUIRED)
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53
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54 ELSE(USE_SYSTEM_NETCDF)
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55 ExternalProject_Add(NETCDF
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56 SOURCE_DIR NETCDF
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57 URL "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.0.1.tar.gz"
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58 URL_MD5 a251453c5477599f050fa4e593295186
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59 BUILD_IN_SOURCE 1
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60 INSTALL_DIR "${CMAKE_INSTALL_PREFIX}"
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61 BUILD_COMMAND make
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62 INSTALL_COMMAND make install
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63 CONFIGURE_COMMAND ./configure --prefix=${CMAKE_INSTALL_PREFIX} --with-pic --disable-netcdf4 --disable-hdf4 --disable-dap --disable-shared --disable-cxx --disable-f77 --disable-f90 --disable-examples --enable-v2 --disable-docs
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64 )
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65
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66 SET(NETCDF_LIBRARY ${CMAKE_INSTALL_PREFIX}/lib/libnetcdf.a )
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67 SET(NETCDF_INCLUDE_DIR ${CMAKE_INSTALL_PREFIX}/include )
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68 ENDIF(USE_SYSTEM_NETCDF)
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69
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70
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71 IF(BUILD_MINC2)
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72 IF(USE_SYSTEM_HDF5 )
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73 FIND_PACKAGE(HDF5 REQUIRED)
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74 ELSE(USE_SYSTEM_HDF5)
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75
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76 ExternalProject_Add(HDF5
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77 SOURCE_DIR HDF5
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78 URL "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.7/src/hdf5-1.8.7.tar.gz"
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79 URL_MD5 37711d4bcb72997e93d495f97c76c33a
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80 BUILD_IN_SOURCE 1
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81 INSTALL_DIR "${CMAKE_INSTALL_PREFIX}"
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82 BUILD_COMMAND make
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83 INSTALL_COMMAND make install
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84 CONFIGURE_COMMAND ./configure --prefix=${CMAKE_INSTALL_PREFIX} --enable-production --with-pic --disable-shared --disable-cxx --disable-f77 --disable-f90 --disable-examples --disable-hl --disable-docs
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85 )
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86
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87 SET(HDF5_INCLUDE_DIR ${CMAKE_INSTALL_PREFIX}/include )
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88 SET(HDF5_LIBRARY ${CMAKE_INSTALL_PREFIX}/lib/libhdf5.a )
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89
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90 ENDIF(USE_SYSTEM_HDF5)
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91 ENDIF(BUILD_MINC2)
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92
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93
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94 ADD_DEFINITIONS(-DHAVE_CONFIG_H)
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96 # aliases
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97 SET(VERSION "${PACKAGE_VERSION}")
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98
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99 # check for prereqs
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100 INCLUDE(CheckFunctionExists)
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101
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102 CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
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103 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
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104
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105 INCLUDE(CheckIncludeFiles)
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106 CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
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107
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108
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109 IF(BUILD_EZMINC)
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110 set(MINC2_INCLUDE_DIRS_CONFIG
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111 ${CMAKE_SOURCE_DIR}/ezminc
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112 )
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113 INCLUDE_DIRECTORIES(
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114 ${CMAKE_SOURCE_DIR}/ezminc
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115 )
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116 ENDIF(BUILD_EZMINC)
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117
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118 IF(BUILD_MINC4ITK AND BUILD_EZMINC)
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119 set(MINC2_INCLUDE_DIRS_CONFIG
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120 ${CMAKE_SOURCE_DIR}/minc4itk
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121 )
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122
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123 INCLUDE_DIRECTORIES(
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124 ${CMAKE_SOURCE_DIR}/minc4itk
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125 )
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126 ENDIF(BUILD_MINC4ITK AND BUILD_EZMINC)
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127
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128
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129 # netcdf and HDF5
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130
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131 IF(BUILD_MINC2)
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132 FIND_PACKAGE(ZLIB REQUIRED)
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133 SET(MINC2 "1")
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134 ELSE(BUILD_MINC2)
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135 SET(MINC2 "0")
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136 ENDIF(BUILD_MINC2)
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137
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138 # config files for build
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139 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/config.h.cmake ${CMAKE_BINARY_DIR}/config.h)
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140
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141 # others
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142 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/epm-header.in ${CMAKE_BINARY_DIR}/epm-header)
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143
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144
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145 # set the master INCLUDE directories
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146 INCLUDE_DIRECTORIES(
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147 ${CMAKE_CURRENT_SOURCE_DIR}
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148 ${CMAKE_BINARY_DIR}
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149 ${CMAKE_SOURCE_DIR}/libsrc
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150 ${CMAKE_SOURCE_DIR}/volume_io/Include
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151 )
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152
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153 INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} )
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154
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155 IF(BUILD_MINC2)
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156 INCLUDE_DIRECTORIES(
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157 ${CMAKE_SOURCE_DIR}/libsrc2
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158 )
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159 ENDIF(BUILD_MINC2)
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160
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161
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162 # some variables
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163 SET(minc1_LIB_SRCS
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164 libsrc/ParseArgv.c
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165 libsrc/dim_conversion.c
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166 libsrc/image_conversion.c
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167 libsrc/minc_convenience.c
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168 libsrc/minc_error.c
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169 libsrc/nd_loop.c
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170 libsrc/netcdf_convenience.c
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171 libsrc/time_stamp.c
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172 libsrc/value_conversion.c
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173 libsrc/voxel_loop.c
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174 libsrc/hdf_convenience.c
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175 libsrc/minc_compat.c
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176 libsrc/minc_simple.c
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177 )
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178
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179 SET(minc2_LIB_SRCS
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180 libsrc2/convert.c
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181 libsrc2/datatype.c
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182 libsrc2/dimension.c
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183 libsrc2/free.c
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184 libsrc2/grpattr.c
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185 libsrc2/hyper.c
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186 libsrc2/label.c
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187 libsrc2/m2util.c
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188 libsrc2/record.c
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189 libsrc2/slice.c
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190 libsrc2/valid.c
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191 libsrc2/volprops.c
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192 libsrc2/volume.c
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193 )
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194
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195 SET(MINC_LIBRARY minc)
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196 SET(MINC_LIBS ${MINC_LIBRARY} ${NETCDF_LIBRARY})
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197
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198 IF(BUILD_MINC2)
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199 INCLUDE_DIRECTORIES( ${HDF5_INCLUDE_DIR} )
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200
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201
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202 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
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203 SET(MINC_LIBRARY minc2)
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204 SET(MINC_LIBS ${MINC_LIBRARY} ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
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205
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206 ADD_LIBRARY(minc2 STATIC ${minc_LIB_SRCS} )
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207
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208 TARGET_LINK_LIBRARIES(minc2 ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
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209
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210 INSTALL(TARGETS minc2 ARCHIVE DESTINATION lib)
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211
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212 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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213 libsrc/voxel_loop.h
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214 libsrc/nd_loop.h
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215 libsrc/time_stamp.h
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216 libsrc/minc_compat.h
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217 volume_io/Include/volume_io.h
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218 libsrc2/minc2.h
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219 libsrc/minc_simple.h
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220 DESTINATION include
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221 )
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222
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223 SET_TARGET_PROPERTIES(minc2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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224
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225 IF(NOT USE_SYSTEM_HDF5)
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226 ADD_DEPENDENCIES(${MINC_LIBRARY} HDF5)
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227 ENDIF(NOT USE_SYSTEM_HDF5)
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228
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229 ELSE(BUILD_MINC2)
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230
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231 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} )
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232 ADD_LIBRARY(minc STATIC ${minc1_LIB_SRCS} )
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233 TARGET_LINK_LIBRARIES(minc ${NETCDF_LIBRARY} )
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234 INSTALL(TARGETS minc ARCHIVE DESTINATION lib)
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235
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236 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
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237 libsrc/voxel_loop.h
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238 libsrc/nd_loop.h
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239 libsrc/time_stamp.h
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240 libsrc/minc_compat.h
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241 volume_io/Include/volume_io.h
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242 libsrc/minc_simple.h
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243 DESTINATION include
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244 )
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245
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246 SET_TARGET_PROPERTIES(minc PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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247 ENDIF(BUILD_MINC2)
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248
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249 IF(NOT USE_SYSTEM_NETCDF)
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250 ADD_DEPENDENCIES(${MINC_LIBRARY} NETCDF)
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251 ENDIF(NOT USE_SYSTEM_NETCDF)
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252
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253
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254 # build the main minc2 library
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255
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256 # volume_io2
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257 SET(volume_io_LIB_SRCS
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258 volume_io/Geometry/colour.c
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259 volume_io/Geometry/colour_def.c
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260 volume_io/Geometry/gaussian.c
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261 volume_io/Geometry/inverse.c
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262 volume_io/Geometry/newton.c
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263 volume_io/Geometry/points.c
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264 volume_io/Geometry/splines.c
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265 volume_io/Geometry/tensors.c
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266 volume_io/Geometry/transforms.c
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267 volume_io/MNI_formats/gen_xf_io.c
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268 volume_io/MNI_formats/gen_xfs.c
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269 volume_io/MNI_formats/grid_transforms.c
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270 volume_io/MNI_formats/mni_io.c
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271 volume_io/MNI_formats/tag_points.c
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272 volume_io/MNI_formats/thin_plate_spline.c
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273 volume_io/Prog_utils/alloc.c
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274 volume_io/Prog_utils/alloc_check.c
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275 volume_io/Prog_utils/arrays.c
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276 volume_io/Prog_utils/files.c
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277 volume_io/Prog_utils/print.c
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278 volume_io/Prog_utils/progress.c
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279 volume_io/Prog_utils/string.c
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280 volume_io/Prog_utils/time.c
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281 volume_io/Volumes/evaluate.c
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282 volume_io/Volumes/get_hyperslab.c
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283 volume_io/Volumes/input_free.c
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284 volume_io/Volumes/input_mnc.c
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285 volume_io/Volumes/input_volume.c
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286 volume_io/Volumes/multidim_arrays.c
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287 volume_io/Volumes/output_mnc.c
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288 volume_io/Volumes/output_volume.c
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289 volume_io/Volumes/set_hyperslab.c
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290 volume_io/Volumes/volume_cache.c
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291 volume_io/Volumes/volumes.c
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292 )
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293
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294 IF(BUILD_MINC2)
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295 # build and install volume_io2 library
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296 ADD_LIBRARY(volume_io2 STATIC ${volume_io_LIB_SRCS})
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297 INSTALL(TARGETS volume_io2 ARCHIVE DESTINATION lib)
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298 SET_TARGET_PROPERTIES(volume_io2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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299 SET( VOLUME_IO_LIB volume_io2)
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300 ADD_DEPENDENCIES(volume_io2 ${MINC_LIBRARY})
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301
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302 ELSE(BUILD_MINC2)
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303 ADD_LIBRARY(volume_io STATIC ${volume_io_LIB_SRCS})
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304 INSTALL(TARGETS volume_io ARCHIVE DESTINATION lib)
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305 SET_TARGET_PROPERTIES(volume_io PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
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306 SET( VOLUME_IO_LIB volume_io)
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307 ADD_DEPENDENCIES(volume_io ${MINC_LIBRARY})
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308 ENDIF(BUILD_MINC2)
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309
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310 INSTALL(FILES volume_io/Include/volume_io/alloc.h
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311 volume_io/Include/volume_io/arrays.h
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312 volume_io/Include/volume_io/basic.h
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313 volume_io/Include/volume_io/def_math.h
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314 volume_io/Include/volume_io/files.h
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315 volume_io/Include/volume_io/geom_structs.h
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316 volume_io/Include/volume_io/geometry.h
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317 volume_io/Include/internal_volume_io.h
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318 volume_io/Include/volume_io/multidim.h
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319 volume_io/Include/volume_io/progress.h
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320 volume_io/Include/volume_io/string_funcs.h
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321 volume_io/Include/volume_io/system_dependent.h
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322 volume_io/Include/volume_io/transforms.h
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323 volume_io/Include/volume_io/vol_io_prototypes.h
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324 volume_io/Include/volume_io/volume.h
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325 volume_io/Include/volume_io/volume_cache.h
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326 DESTINATION include/volume_io)
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327
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328 IF(BUILD_TOOLS)
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329 # now build the progs subdir
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330 ADD_SUBDIRECTORY( progs )
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331 ENDIF(BUILD_TOOLS)
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332
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333 IF(BUILD_CONVERTERS)
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334 # and then the conversion subdir
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335 ADD_SUBDIRECTORY( conversion )
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336 ENDIF(BUILD_CONVERTERS)
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337
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338 IF(BUILD_EZMINC)
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339 ADD_SUBDIRECTORY( ezminc )
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340 ENDIF(BUILD_EZMINC)
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341
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342 IF(BUILD_MINC4ITK AND BUILD_EZMINC)
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343 ADD_SUBDIRECTORY( minc4itk )
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344 ENDIF(BUILD_MINC4ITK AND BUILD_EZMINC)
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345
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346 # config for the build directory
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347 set(MINC2_USE_FILE_CONFIG ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake)
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348
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349 set(MINC2_INCLUDE_DIRS_CONFIG
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350 ${CMAKE_CURRENT_SOURCE_DIR}
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351 ${CMAKE_SOURCE_DIR}/libsrc
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352 ${CMAKE_SOURCE_DIR}/volume_io/Include
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353 )
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354
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355 IF(BUILD_MINC2)
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356 set(MINC2_INCLUDE_DIRS_CONFIG
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357 ${MINC2_INCLUDE_DIRS_CONFIG}
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358 ${CMAKE_SOURCE_DIR}/libsrc2
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359 )
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360 ENDIF(BUILD_MINC2)
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361
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362 set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_CURRENT_BINARY_DIR})
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363
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364 configure_file(MINC2Config.cmake.in
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365 ${CMAKE_CURRENT_BINARY_DIR}/MINC2Config.cmake @ONLY )
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366
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367 configure_file(UseMINC2.cmake.in
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368 ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake @ONLY)
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369
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370 # config for install dir
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371 set(MINC2_USE_FILE_CONFIG "${CMAKE_INSTALL_PREFIX}/lib/MINC2/UseMINC2.cmake")
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372
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373 set(MINC2_INCLUDE_DIRS_CONFIG
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374 ${CMAKE_INSTALL_PREFIX}/include
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375 )
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376
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377 set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_INSTALL_PREFIX}/lib)
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378
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379 configure_file(MINC2Config.cmake.in
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380 ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake @ONLY )
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381
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382 configure_file(UseMINC2.cmake.in
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383 ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake @ONLY)
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384
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385 install(FILES ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake
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386 DESTINATION lib/MINC2
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387 COMPONENT Development)
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388
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389 # testing
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390
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391 IF(BUILD_TESTING)
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392 ADD_SUBDIRECTORY( testdir )
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393 ENDIF(BUILD_TESTING)
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394
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395
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396