annotate CMakeLists.txt @ 2617:6dcad44d9b38

Merge branch 'master' of github.com:andrewjanke/minc
author Vladimir S. FONOV <vladimir.fonov@gmail.com>
date Wed, 22 Feb 2012 16:52:43 -0500
parents 68a661a35343 f139eafe48ce
children b22c9628ace6
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
1 # CMakeFiles.txt for the MINC2 library
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
2 #
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
3 # Andrew Janke - a.janke@gmail.com
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
4 # Vladimir S. FONOV - vladimir.fonov@gmail.com
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
5
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
6 CMAKE_MINIMUM_REQUIRED(VERSION 2.8)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
7 INCLUDE(ExternalProject)
2489
0cf5f64c9d19 * added CMAKE minimum version
rotor <rotor>
parents: 2476
diff changeset
8
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
9 PROJECT(minc2)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
10
2576
f96c8a022cf6 small bug fixes
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2574
diff changeset
11 SET(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake-modules")
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
12 ENABLE_TESTING()
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
13 INCLUDE(CTest)
2396
513288aab9b0 * more CMake updates
rotor <rotor>
parents: 2395
diff changeset
14
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
15 #ADD_SUBDIRECTORY( doc )
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
16
2396
513288aab9b0 * more CMake updates
rotor <rotor>
parents: 2395
diff changeset
17 # Packaging defines
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
18 SET(CPACK_GENERATOR TGZ)
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
19 SET(CPACK_PACKAGE_VERSION_MAJOR 2)
2551
3fe122bac48b added option not to build tools and converters
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2550
diff changeset
20 SET(CPACK_PACKAGE_VERSION_MINOR 1)
3fe122bac48b added option not to build tools and converters
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2550
diff changeset
21 SET(CPACK_PACKAGE_VERSION_PATCH 1)
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
22 INCLUDE(CPack)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
23
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
24
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
25 SET(PACKAGE "minc2")
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
26 SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
27
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
28 SET(PACKAGE_NAME "minc2")
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
29 SET(PACKAGE_VERSION "${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH}")
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
30 SET(PACKAGE_STRING "${PACKAGE_NAME} ${PACKAGE_VERSION}")
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
31
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
32 option(BUILD_SHARED_LIBS "Build minc2 with shared libraries." OFF)
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
33 OPTION(BUILD_MINC2 "Support minc2 file format" ON)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
34 OPTION(BUILD_TOOLS "Build minc tools (mincreshape,mincresample, etc)" ON)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
35 OPTION(BUILD_CONVERTERS "Build minc conversion programs (mnc2nii, nii2mnc , dcm2mnc...)" ON)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
36 OPTION(BUILD_EZMINC "Build C++ interface library EZminc" ON)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
37 OPTION(USE_SYSTEM_NETCDF "Use System NETCDF > 3.6.3" OFF)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
38
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
39
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
40 FIND_PACKAGE(ITK QUIET)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
41
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
42 IF(BUILD_EZMINC AND ITK_FOUND)
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
43 OPTION(BUILD_MINC4ITK "Build ITK interface" ON)
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
44 ENDIF(BUILD_EZMINC AND ITK_FOUND)
2555
425fa26827ab Integrated minc4itk building
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2553
diff changeset
45
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
46 IF(BUILD_MINC2)
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
47 IF(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
48
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
49 IF(ITKHDF5_LOADED)#ITK_MODULES_ENABLED MATCHES "ITKHDF5"
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
50 message(WARNING "ITK compiled with HDF5 support!")
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
51 SET(USE_ITK_HDF5 ON)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
52 ENDIF(ITKHDF5_LOADED)#ITK_MODULES_ENABLED MATCHES "ITKHDF5"
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
53
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
54 ELSE(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
55 OPTION(USE_SYSTEM_HDF5 "Use System HDF5 > 1.8 " OFF)
2616
68a661a35343 merging with Lates version of minc
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2615
diff changeset
56 SET(USE_ITK_HDF5 OFF)
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
57 ENDIF(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
58
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
59 ENDIF(BUILD_MINC2)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
60
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
61 IF(BUILD_SHARED_LIBS)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
62 SET(LIBRARY_TYPE SHARED)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
63 SET(LIBRARY_INSTALL LIBRARY)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
64 ELSE(BUILD_SHARED_LIBS)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
65 SET(LIBRARY_TYPE STATIC)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
66 SET(LIBRARY_INSTALL ARCHIVE)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
67 ENDIF(BUILD_SHARED_LIBS)
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
68
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
69 # external packages
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
70 IF(USE_SYSTEM_NETCDF)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
71 FIND_PACKAGE(NETCDF REQUIRED)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
72
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
73 ELSE(USE_SYSTEM_NETCDF)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
74 ExternalProject_Add(NETCDF
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
75 SOURCE_DIR NETCDF
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
76 URL "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.0.1.tar.gz"
2577
55b122487957 fixing saving dti images
Vladimir S. FONOV <vfonov@ubuntu-64bit.(none)>
parents: 2576
diff changeset
77 URL_MD5 "a251453c5477599f050fa4e593295186"
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
78 BUILD_IN_SOURCE 1
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
79 INSTALL_DIR "${CMAKE_INSTALL_PREFIX}"
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
80 BUILD_COMMAND make
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
81 INSTALL_COMMAND make install
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
82 CONFIGURE_COMMAND ./configure --prefix=${CMAKE_INSTALL_PREFIX} --with-pic --disable-netcdf4 --disable-hdf4 --disable-dap --disable-shared --disable-cxx --disable-f77 --disable-f90 --disable-examples --enable-v2 --disable-docs
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
83 )
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
84
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
85 SET(NETCDF_LIBRARY ${CMAKE_INSTALL_PREFIX}/lib/libnetcdf.a )
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
86 SET(NETCDF_INCLUDE_DIR ${CMAKE_INSTALL_PREFIX}/include )
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
87 ENDIF(USE_SYSTEM_NETCDF)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
88
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
89
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
90 IF(BUILD_MINC2)
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
91 IF(USE_ITK_HDF5)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
92 SET(HDF5_INCLUDE_DIR ${ITKHDF5_INCLUDE_DIRS})
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
93 SET(HDF5_LIBRARY ${ITKHDF5_LIBRARIES})
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
94 SET(ZLIB_LIBRARIES ${ITKZLIB_LIBRARIES})
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
95 ELSE(USE_ITK_HDF5)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
96 FIND_PACKAGE(ZLIB REQUIRED)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
97
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
98 IF(USE_SYSTEM_HDF5 )
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
99 FIND_PACKAGE(HDF5 REQUIRED)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
100 ELSE(USE_SYSTEM_HDF5)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
101
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
102 ExternalProject_Add(HDF5
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
103 SOURCE_DIR HDF5
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
104 URL "http://www.hdfgroup.org/ftp/HDF5/releases/hdf5-1.8.7/src/hdf5-1.8.7.tar.gz"
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
105 URL_MD5 "37711d4bcb72997e93d495f97c76c33a"
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
106 BUILD_IN_SOURCE 1
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
107 INSTALL_DIR "${CMAKE_INSTALL_PREFIX}"
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
108 BUILD_COMMAND make
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
109 INSTALL_COMMAND make install
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
110 CONFIGURE_COMMAND ./configure --prefix=${CMAKE_INSTALL_PREFIX} --with-pic --disable-shared --disable-cxx --disable-f77 --disable-f90 --disable-examples --disable-hl --disable-docs
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
111 )
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
112
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
113 SET(HDF5_INCLUDE_DIR ${CMAKE_INSTALL_PREFIX}/include )
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
114 SET(HDF5_LIBRARY ${CMAKE_INSTALL_PREFIX}/lib/libhdf5.a )
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
115
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
116 ENDIF(USE_SYSTEM_HDF5)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
117 ENDIF(USE_ITK_HDF5)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
118 ENDIF(BUILD_MINC2)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
119
2398
585506fdf584 * working on CMake build for progs
rotor <rotor>
parents: 2397
diff changeset
120 ADD_DEFINITIONS(-DHAVE_CONFIG_H)
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
121
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
122 # aliases
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
123 SET(VERSION "${PACKAGE_VERSION}")
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
124
2396
513288aab9b0 * more CMake updates
rotor <rotor>
parents: 2395
diff changeset
125 # check for prereqs
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
126 INCLUDE(CheckFunctionExists)
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
127
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
128 CHECK_FUNCTION_EXISTS(mkstemp HAVE_MKSTEMP)
2579
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
129 CHECK_FUNCTION_EXISTS(tmpnam HAVE_TMPNAM)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
130 CHECK_FUNCTION_EXISTS(tempnam HAVE_TEMPNAM)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
131 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
2579
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
132 CHECK_FUNCTION_EXISTS(popen HAVE_POPEN)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
133 CHECK_FUNCTION_EXISTS(fork HAVE_WORKING_FORK)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
134 CHECK_FUNCTION_EXISTS(vfork HAVE_WORKING_VFORK)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
135 CHECK_FUNCTION_EXISTS(fdopen HAVE_FDOPEN)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
136 CHECK_FUNCTION_EXISTS(strdup HAVE_STRDUP)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
137 CHECK_FUNCTION_EXISTS(getpwnam HAVE_GETPWNAM)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
138 CHECK_FUNCTION_EXISTS(select HAVE_SELECT)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
139 CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
140 CHECK_FUNCTION_EXISTS(sysconf HAVE_SYSCONF)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
141 CHECK_FUNCTION_EXISTS(system HAVE_SYSTEM)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
142
2398
585506fdf584 * working on CMake build for progs
rotor <rotor>
parents: 2397
diff changeset
143 INCLUDE(CheckIncludeFiles)
2579
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
144 CHECK_INCLUDE_FILES(float.h HAVE_FLOAT_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
145 CHECK_INCLUDE_FILES(sys/dir.h HAVE_SYS_DIR_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
146 CHECK_INCLUDE_FILES(sys/ndir.h HAVE_SYS_NDIR_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
147 CHECK_INCLUDE_FILES(sys/stat.h HAVE_SYS_STAT_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
148 CHECK_INCLUDE_FILES(sys/types.h HAVE_SYS_TYPES_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
149 CHECK_INCLUDE_FILES(sys/wait.h HAVE_SYS_WAIT_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
150 CHECK_INCLUDE_FILES(values.h HAVE_VALUES_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
151 CHECK_INCLUDE_FILES(unistd.h HAVE_UNISTD_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
152 CHECK_INCLUDE_FILES(dirent.h HAVE_DIRENT_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
153 CHECK_INCLUDE_FILES(memory.h HAVE_MEMORY_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
154 CHECK_INCLUDE_FILES(stdlib.h HAVE_STDLIB_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
155 CHECK_INCLUDE_FILES(fcntl.h HAVE_FCNTL_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
156 CHECK_INCLUDE_FILES(dlfcn.h HAVE_DLFCN_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
157 CHECK_INCLUDE_FILES(vfork.h HAVE_VFORK_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
158 CHECK_INCLUDE_FILES(inttypes.h HAVE_INTTYPES_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
159 CHECK_INCLUDE_FILES(string.h HAVE_STRING_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
160 CHECK_INCLUDE_FILES(strings.h HAVE_STRINGS_H)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
161 CHECK_INCLUDE_FILES(pwd.h HAVE_PWD_H)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
162
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
163
2579
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
164
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
165 IF(ZLIB_FOUND)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
166 SET(HAVE_ZLIB 1)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
167 ELSE(ZLIB_FOUND)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
168 FIND_PACKAGE(ZLIB)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
169 IF(ZLIB_FOUND)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
170 SET(HAVE_ZLIB 1)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
171 ENDIF(ZLIB_FOUND)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
172 ENDIF(ZLIB_FOUND)
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
173
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
174 IF(BUILD_EZMINC)
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
175 set(MINC2_INCLUDE_DIRS_CONFIG
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
176 ${CMAKE_SOURCE_DIR}/ezminc
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
177 )
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
178 INCLUDE_DIRECTORIES(
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
179 ${CMAKE_SOURCE_DIR}/ezminc
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
180 )
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
181 ENDIF(BUILD_EZMINC)
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
182
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
183 IF(BUILD_MINC4ITK AND BUILD_EZMINC)
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
184 set(MINC2_INCLUDE_DIRS_CONFIG
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
185 ${CMAKE_SOURCE_DIR}/minc4itk
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
186 )
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
187
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
188 INCLUDE_DIRECTORIES(
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
189 ${CMAKE_SOURCE_DIR}/minc4itk
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
190 )
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
191 ENDIF(BUILD_MINC4ITK AND BUILD_EZMINC)
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
192
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
193
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
194 # netcdf and HDF5
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
195
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
196 IF(BUILD_MINC2)
2550
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
197 FIND_PACKAGE(ZLIB REQUIRED)
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
198 SET(MINC2 "1")
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
199 ELSE(BUILD_MINC2)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
200 SET(MINC2 "0")
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
201 ENDIF(BUILD_MINC2)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
202
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
203 # config files for build
2579
99b46b8c7c71 fixing configuration bugs when building with cmake
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2578
diff changeset
204 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/config.h.cmake ${CMAKE_BINARY_DIR}/config.h @ONLY)
2395
b400c187fc72 * Added initial CMake build files, with support for package building
rotor <rotor>
parents: 2394
diff changeset
205
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
206 # others
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
207 CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/epm-header.in ${CMAKE_BINARY_DIR}/epm-header)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
208
2397
450ea2e583ac * almost complete version for release
rotor <rotor>
parents: 2396
diff changeset
209
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
210 # set the master INCLUDE directories
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
211 INCLUDE_DIRECTORIES(
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
212 ${CMAKE_CURRENT_SOURCE_DIR}
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
213 ${CMAKE_BINARY_DIR}
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
214 ${CMAKE_SOURCE_DIR}/libsrc
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
215 ${CMAKE_SOURCE_DIR}/volume_io/Include
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
216 )
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
217
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
218 INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} )
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
219
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
220 IF(BUILD_MINC2)
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
221 INCLUDE_DIRECTORIES(
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
222 ${CMAKE_SOURCE_DIR}/libsrc2
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
223 )
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
224 ENDIF(BUILD_MINC2)
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
225
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
226
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
227 # some variables
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
228 SET(minc1_LIB_SRCS
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
229 libsrc/ParseArgv.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
230 libsrc/dim_conversion.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
231 libsrc/image_conversion.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
232 libsrc/minc_convenience.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
233 libsrc/minc_error.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
234 libsrc/nd_loop.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
235 libsrc/netcdf_convenience.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
236 libsrc/time_stamp.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
237 libsrc/value_conversion.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
238 libsrc/voxel_loop.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
239 libsrc/hdf_convenience.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
240 libsrc/minc_compat.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
241 libsrc/minc_simple.c
2584
f139eafe48ce fixed cmake build, hopefully fixing #4
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2583
diff changeset
242 libsrc/read_file_names.c
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
243 )
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
244
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
245 SET(minc2_LIB_SRCS
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
246 libsrc2/convert.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
247 libsrc2/datatype.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
248 libsrc2/dimension.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
249 libsrc2/free.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
250 libsrc2/grpattr.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
251 libsrc2/hyper.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
252 libsrc2/label.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
253 libsrc2/m2util.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
254 libsrc2/record.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
255 libsrc2/slice.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
256 libsrc2/valid.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
257 libsrc2/volprops.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
258 libsrc2/volume.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
259 )
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
260
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
261 SET(MINC2_LIBRARY minc)
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
262 SET(MINC2_LIBRARIES ${MINC2_LIBRARY} ${NETCDF_LIBRARY})
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
263
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
264 IF(BUILD_MINC2)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
265 INCLUDE_DIRECTORIES( ${HDF5_INCLUDE_DIR} )
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
266
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
267
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
268 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
269 SET(MINC2_LIBRARY minc2)
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
270 SET(MINC2_LIBRARIES ${MINC2_LIBRARY} ${HDF5_LIBRARY} ${NETCDF_LIBRARY} ${ZLIB_LIBRARIES} m )
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
271
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
272 ADD_LIBRARY(minc2 ${LIBRARY_TYPE} ${minc_LIB_SRCS} )
2550
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
273
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
274 TARGET_LINK_LIBRARIES(minc2 ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
275
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
276 INSTALL(TARGETS minc2 ${LIBRARY_INSTALL} DESTINATION lib)
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
277
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
278 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
279 libsrc/voxel_loop.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
280 libsrc/nd_loop.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
281 libsrc/time_stamp.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
282 libsrc/minc_compat.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
283 volume_io/Include/volume_io.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
284 libsrc2/minc2.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
285 libsrc/minc_simple.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
286 DESTINATION include
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
287 )
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
288
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
289 SET_TARGET_PROPERTIES(minc2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
290
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
291 IF(NOT USE_SYSTEM_HDF5)
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
292 ADD_DEPENDENCIES(${MINC2_LIBRARY} HDF5)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
293 ENDIF(NOT USE_SYSTEM_HDF5)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
294
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
295 ELSE(BUILD_MINC2)
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
296
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
297 SET(minc_LIB_SRCS ${minc1_LIB_SRCS} )
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
298 ADD_LIBRARY(minc ${LIBRARY_TYPE} ${minc1_LIB_SRCS} )
2550
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
299 TARGET_LINK_LIBRARIES(minc ${NETCDF_LIBRARY} )
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
300 INSTALL(TARGETS minc ${LIBRARY_INSTALL} DESTINATION lib)
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
301
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
302 INSTALL(FILES libsrc/minc.h libsrc/ParseArgv.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
303 libsrc/voxel_loop.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
304 libsrc/nd_loop.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
305 libsrc/time_stamp.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
306 libsrc/minc_compat.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
307 volume_io/Include/volume_io.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
308 libsrc/minc_simple.h
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
309 DESTINATION include
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
310 )
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
311
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
312 SET_TARGET_PROPERTIES(minc PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
313 ENDIF(BUILD_MINC2)
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
314
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
315 IF(NOT USE_SYSTEM_NETCDF)
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
316 ADD_DEPENDENCIES(${MINC2_LIBRARY} NETCDF)
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
317 ENDIF(NOT USE_SYSTEM_NETCDF)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
318
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
319 # build the main minc2 library
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
320
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
321 # volume_io2
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
322 SET(volume_io_LIB_SRCS
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
323 volume_io/Geometry/colour.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
324 volume_io/Geometry/colour_def.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
325 volume_io/Geometry/gaussian.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
326 volume_io/Geometry/inverse.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
327 volume_io/Geometry/newton.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
328 volume_io/Geometry/points.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
329 volume_io/Geometry/splines.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
330 volume_io/Geometry/tensors.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
331 volume_io/Geometry/transforms.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
332 volume_io/MNI_formats/gen_xf_io.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
333 volume_io/MNI_formats/gen_xfs.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
334 volume_io/MNI_formats/grid_transforms.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
335 volume_io/MNI_formats/mni_io.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
336 volume_io/MNI_formats/tag_points.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
337 volume_io/MNI_formats/thin_plate_spline.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
338 volume_io/Prog_utils/alloc.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
339 volume_io/Prog_utils/alloc_check.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
340 volume_io/Prog_utils/arrays.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
341 volume_io/Prog_utils/files.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
342 volume_io/Prog_utils/print.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
343 volume_io/Prog_utils/progress.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
344 volume_io/Prog_utils/string.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
345 volume_io/Prog_utils/time.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
346 volume_io/Volumes/evaluate.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
347 volume_io/Volumes/get_hyperslab.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
348 volume_io/Volumes/input_free.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
349 volume_io/Volumes/input_mnc.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
350 volume_io/Volumes/input_volume.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
351 volume_io/Volumes/multidim_arrays.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
352 volume_io/Volumes/output_mnc.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
353 volume_io/Volumes/output_volume.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
354 volume_io/Volumes/set_hyperslab.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
355 volume_io/Volumes/volume_cache.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
356 volume_io/Volumes/volumes.c
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
357 )
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
358
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
359 IF(BUILD_MINC2)
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
360 # build and install volume_io2 library
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
361 ADD_LIBRARY(volume_io2 ${LIBRARY_TYPE} ${volume_io_LIB_SRCS})
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
362 INSTALL(TARGETS volume_io2 ${LIBRARY_INSTALL} DESTINATION lib)
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
363 SET_TARGET_PROPERTIES(volume_io2 PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
364 SET( VOLUME_IO_LIBRARY volume_io2)
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
365 ADD_DEPENDENCIES(volume_io2 ${MINC2_LIBRARY})
2550
1a69a4b622eb finished beatifying cmake scripts
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2549
diff changeset
366
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
367 ELSE(BUILD_MINC2)
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
368 ADD_LIBRARY(volume_io ${LIBRARY_TYPE} ${volume_io_LIB_SRCS})
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
369 INSTALL(TARGETS volume_io ${LIBRARY_INSTALL} DESTINATION lib)
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
370 SET_TARGET_PROPERTIES(volume_io PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${CPACK_PACKAGE_VERSION_MAJOR})
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
371 SET( VOLUME_IO_LIBRARY volume_io)
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
372 ADD_DEPENDENCIES(volume_io ${MINC2_LIBRARY})
2549
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
373 ENDIF(BUILD_MINC2)
dcef05d4c2e2 Beautifying cmake files
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2489
diff changeset
374
2394
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
375 INSTALL(FILES volume_io/Include/volume_io/alloc.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
376 volume_io/Include/volume_io/arrays.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
377 volume_io/Include/volume_io/basic.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
378 volume_io/Include/volume_io/def_math.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
379 volume_io/Include/volume_io/files.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
380 volume_io/Include/volume_io/geom_structs.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
381 volume_io/Include/volume_io/geometry.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
382 volume_io/Include/internal_volume_io.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
383 volume_io/Include/volume_io/multidim.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
384 volume_io/Include/volume_io/progress.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
385 volume_io/Include/volume_io/string_funcs.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
386 volume_io/Include/volume_io/system_dependent.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
387 volume_io/Include/volume_io/transforms.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
388 volume_io/Include/volume_io/vol_io_prototypes.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
389 volume_io/Include/volume_io/volume.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
390 volume_io/Include/volume_io/volume_cache.h
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
391 DESTINATION include/volume_io)
7e378df1eff6 * Added (not yet complete) CMake build file for ITK integration
rotor <rotor>
parents:
diff changeset
392
2551
3fe122bac48b added option not to build tools and converters
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2550
diff changeset
393 IF(BUILD_TOOLS)
2398
585506fdf584 * working on CMake build for progs
rotor <rotor>
parents: 2397
diff changeset
394 # now build the progs subdir
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
395 ADD_SUBDIRECTORY( progs )
2551
3fe122bac48b added option not to build tools and converters
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2550
diff changeset
396 ENDIF(BUILD_TOOLS)
2398
585506fdf584 * working on CMake build for progs
rotor <rotor>
parents: 2397
diff changeset
397
2551
3fe122bac48b added option not to build tools and converters
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2550
diff changeset
398 IF(BUILD_CONVERTERS)
2401
664a826dbd7d * Added build for conversion to CMake
rotor <rotor>
parents: 2399
diff changeset
399 # and then the conversion subdir
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
400 ADD_SUBDIRECTORY( conversion )
2551
3fe122bac48b added option not to build tools and converters
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2550
diff changeset
401 ENDIF(BUILD_CONVERTERS)
2552
345f8c960657 added ezminc library
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2551
diff changeset
402
345f8c960657 added ezminc library
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2551
diff changeset
403 IF(BUILD_EZMINC)
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
404 ADD_SUBDIRECTORY( ezminc )
2553
0b52afea4248 integrated ezminc building....
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2552
diff changeset
405 ENDIF(BUILD_EZMINC)
2555
425fa26827ab Integrated minc4itk building
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2553
diff changeset
406
425fa26827ab Integrated minc4itk building
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2553
diff changeset
407 IF(BUILD_MINC4ITK AND BUILD_EZMINC)
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
408 ADD_SUBDIRECTORY( minc4itk )
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
409 ENDIF(BUILD_MINC4ITK AND BUILD_EZMINC)
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
410
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
411 # config for the build directory
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
412 set(MINC2_USE_FILE_CONFIG ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake)
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
413
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
414 set(MINC2_INCLUDE_DIRS_CONFIG
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
415 ${CMAKE_CURRENT_SOURCE_DIR}
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
416 ${CMAKE_SOURCE_DIR}/libsrc
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
417 ${CMAKE_SOURCE_DIR}/volume_io/Include
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
418 )
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
419
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
420 IF(BUILD_MINC2)
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
421 set(MINC2_INCLUDE_DIRS_CONFIG
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
422 ${MINC2_INCLUDE_DIRS_CONFIG}
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
423 ${CMAKE_SOURCE_DIR}/libsrc2
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
424 )
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
425 ENDIF(BUILD_MINC2)
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
426
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
427 IF(BUILD_EZMINC)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
428 SET(EZMINC_LIBRARIES minc_io ${MINC2_LIBRARIES})
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
429 ENDIF(BUILD_EZMINC)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
430
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
431 IF(BUILD_MINC4ITK)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
432 SET(MINC4ITK_LIBRARIES minc4itk ${EZMINC_LIBRARIES})
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
433 ENDIF(BUILD_MINC4ITK)
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
434
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
435 set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_CURRENT_BINARY_DIR})
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
436
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
437 configure_file(MINC2Config.cmake.in
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
438 ${CMAKE_CURRENT_BINARY_DIR}/MINC2Config.cmake @ONLY )
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
439
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
440 configure_file(UseMINC2.cmake.in
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
441 ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake @ONLY)
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
442
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
443 # config for install dir
2583
da1ba6dfb580 Fixing CMakeLists.txt
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2582
diff changeset
444 set(MINC2_USE_FILE_CONFIG "${CMAKE_INSTALL_PREFIX}/lib/UseMINC2.cmake")
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
445
2604
a0c8d277185d More tight integration with ITK4 and simplification for EZMINC/MINC4ITK use
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2602
diff changeset
446 set(MINC2_INCLUDE_DIRS_CONFIG
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
447 ${CMAKE_INSTALL_PREFIX}/include
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
448 )
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
449
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
450 set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_INSTALL_PREFIX}/lib)
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
451
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
452 configure_file(MINC2Config.cmake.in
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
453 ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake @ONLY )
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
454
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
455 configure_file(UseMINC2.cmake.in
2573
84714ccca340 fixing CMake building
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2567
diff changeset
456 ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake @ONLY)
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
457
2602
0bbe7def883e Making building shared libraries possible
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2601
diff changeset
458 INSTALL(FILES ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake
2580
364f7e4b2fef Fixing minc cmake files
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2579
diff changeset
459 DESTINATION lib
2567
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
460 COMPONENT Development)
cbe65658451f Beautifying minc build
Vladimir S. FONOV <vladimir.fonov@gmail.com>
parents: 2555
diff changeset
461
2574
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
462 # testing
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
463
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
464 IF(BUILD_TESTING)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
465 ADD_SUBDIRECTORY( testdir )
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
466 ENDIF(BUILD_TESTING)
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
467
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
468
bba21faaef13 making a super build
Vladimir Fonov <vladimir.fonov@gmail.com>
parents: 2573
diff changeset
469