Mercurial > hg > minc-tools

changeset 2660:ccc4c941889c

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merged with upstream
author Vladimir S. FONOV <vladimir.fonov@gmail.com>
date Mon, 02 Apr 2012 18:15:21 -0400
parents d49870395329 (current diff) 6665274ca051 (diff)
children 4f18e69b2b5a
files CMakeLists.txt
diffstat 2 files changed, 88 insertions(+), 404 deletions(-) [+]
line wrap: on
line diff
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -1,387 +1,71 @@
-# CMakeFiles.txt for the MINC2 library
+# CMakeFiles.txt for the EZminc
 #
-# Andrew Janke - a.janke@gmail.com
 # Vladimir S. FONOV - vladimir.fonov@gmail.com
 
-PROJECT(minc2)
-
-SET(MINC2_PACKAGE_VERSION_MAJOR 2)
-SET(MINC2_PACKAGE_VERSION_MINOR 1)
-SET(MINC2_PACKAGE_VERSION_PATCH 20)
-SET(PACKAGE "minc2")
-SET(PACKAGE_BUGREPORT "a.janke@gmail.com")
-
-SET(PACKAGE_NAME "minc2")
-SET(PACKAGE_VERSION "${MINC2_PACKAGE_VERSION_MAJOR}.${MINC2_PACKAGE_VERSION_MINOR}.${MINC2_PACKAGE_VERSION_PATCH}")
-SET(PACKAGE_STRING  "${PACKAGE_NAME} ${PACKAGE_VERSION}")
-
 CMAKE_MINIMUM_REQUIRED(VERSION 2.6)
 
-IF(MINC_TOOLKIT_BUILD)
-  SET(MINC2_EXTERNALLY_CONFIGURED ON)
-ENDIF(MINC_TOOLKIT_BUILD)
-
-IF(NOT MINC2_EXTERNALLY_CONFIGURED)
-  SET(CMAKE_MODULE_PATH "${CMAKE_MODULE_PATH}" "${CMAKE_CURRENT_SOURCE_DIR}/cmake-modules")
-  ENABLE_TESTING()
-  INCLUDE(CTest)
-  
-  SET(CPACK_GENERATOR TGZ)
-  SET(CPACK_PACKAGE_VERSION_MAJOR ${MINC2_PACKAGE_VERSION_MAJOR})
-  SET(CPACK_PACKAGE_VERSION_MINOR ${MINC2_PACKAGE_VERSION_MINOR})
-  SET(CPACK_PACKAGE_VERSION_PATCH ${MINC2_PACKAGE_VERSION_PATCH})
-  
-  INCLUDE(CPack)
-ENDIF(NOT MINC2_EXTERNALLY_CONFIGURED)
-
-#ADD_SUBDIRECTORY( doc )
+SET(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} "${CMAKE_CURRENT_SOURCE_DIR}/cmake-modules")
 
-OPTION(MINC2_BUILD_V2          "Support minc2 file format" ON)
-OPTION(MINC2_BUILD_TOOLS       "Build minc tools (mincreshape,mincresample, etc)" ON)
-OPTION(MINC2_BUILD_CONVERTERS  "Build minc conversion programs (mnc2nii, nii2mnc , dcm2mnc...)" ON)
-OPTION(MINC2_BUILD_EZMINC      "Build C++ interface library EZminc" ON)
-OPTION(MINC2_BUILD_SHARED_LIBS "Build minc2 with shared libraries." OFF)
-
-IF(MINC2_BUILD_V2 AND NOT MINC2_EXTERNALLY_CONFIGURED)
+IF(NOT MINC_TOOLKIT_BUILD)
+  PROJECT (ezminc)
+  FIND_PACKAGE( MINC2 REQUIRED )
+  
+  FIND_PACKAGE(GSL)
+  FIND_PACKAGE(FFTW3F)
 
-  IF(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
-    IF(ITKHDF5_LOADED)
-      SET(USE_ITK_HDF5 ON)
-    ELSE(ITKHDF5_LOADED)
-      SET(USE_ITK_HDF5 OFF)
-    ENDIF(ITKHDF5_LOADED)
-  ELSE(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
-    SET(USE_ITK_HDF5 OFF)
-  ENDIF(ITK_FOUND AND ITK_VERSION_MAJOR VERSION_EQUAL 4) # check if using ITK HDF5 library
-  
-ENDIF(MINC2_BUILD_V2 AND NOT MINC2_EXTERNALLY_CONFIGURED)
-
-IF(BUILD_SHARED_LIBS)
-  SET(LIBRARY_TYPE SHARED)
-  SET(LIBRARY_INSTALL LIBRARY)
-ELSE(BUILD_SHARED_LIBS)
-  SET(LIBRARY_TYPE STATIC)
-  SET(LIBRARY_INSTALL ARCHIVE)
-ENDIF(BUILD_SHARED_LIBS)
+  IF(USE_ITK_HDF5) # have to use HDF5 and Zlib from ITK
+    FIND_PACKAGE(ITK REQUIRED)
+    LINK_DIRECTORIES(${ITK_LIBRARY_DIRS})
+  ELSE(USE_ITK_HDF5)
+    FIND_PACKAGE(ITK)
+  ENDIF(USE_ITK_HDF5)
+ENDIF(NOT MINC_TOOLKIT_BUILD)
 
 
-# external packages
-IF(NOT MINC2_EXTERNALLY_CONFIGURED)
-  FIND_PACKAGE(NETCDF REQUIRED)
-ENDIF(NOT MINC2_EXTERNALLY_CONFIGURED)
+INCLUDE( ${MINC2_USE_FILE} )
+OPTION(BUILD_MINCNLM  "Build Non-local means denoising programm,requires GSL (protected by a license IDDN.FR.001.070033.000.S.P.2007.000.21000)" OFF)
+OPTION(BUILD_DISTORTION_CORRECTION "Build distortion correction tools, requires GSL" OFF)
+OPTION(BUILD_MRFSEG   "Build mrfseg - tissue classification program from Jussi Tohka" OFF)
+OPTION(BUILD_DD       "Build Diffeomorphic Demons (requires ITK)" OFF)
 
 
-IF(MINC2_BUILD_V2 AND NOT MINC2_EXTERNALLY_CONFIGURED)
-  IF(USE_ITK_HDF5)
-    SET(HDF5_INCLUDE_DIR "${ITKHDF5_INCLUDE_DIRS}/itkhdf5") # a hack?
-    SET(HDF5_LIBRARY     ${ITKHDF5_LIBRARIES})
-    SET(ZLIB_LIBRARIES   ${ITKZLIB_LIBRARIES})
-  ELSE(USE_ITK_HDF5)
-    FIND_PACKAGE(ZLIB REQUIRED)
-    FIND_PACKAGE(HDF5 REQUIRED)
-  ENDIF(USE_ITK_HDF5)
-  
-  IF(ZLIB_FOUND)
-    SET(HAVE_ZLIB 1)
-  ELSE(ZLIB_FOUND)
-    FIND_PACKAGE(ZLIB)
-    IF(ZLIB_FOUND)
-      SET(HAVE_ZLIB 1)
-    ENDIF(ZLIB_FOUND)
-  ENDIF(ZLIB_FOUND)
-ENDIF(MINC2_BUILD_V2 AND NOT MINC2_EXTERNALLY_CONFIGURED)
-
-# add for building relocatable library
-IF(UNIX)
-  SET(CMAKE_C_FLAGS   "${CMAKE_C_FLAGS} -fPIC")
-  SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -fPIC")
-ENDIF(UNIX)
-
-# check for prereqs
-INCLUDE(CheckFunctionExists)
+INCLUDE_DIRECTORIES( ${CMAKE_CURRENT_SOURCE_DIR}/image_proc )
+ADD_SUBDIRECTORY( image_proc )
 
-CHECK_FUNCTION_EXISTS(mkstemp  HAVE_MKSTEMP)
-CHECK_FUNCTION_EXISTS(tmpnam   HAVE_TMPNAM)
-CHECK_FUNCTION_EXISTS(tempnam  HAVE_TEMPNAM)
-CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR)
-CHECK_FUNCTION_EXISTS(popen    HAVE_POPEN)
-CHECK_FUNCTION_EXISTS(fork     HAVE_WORKING_FORK)
-CHECK_FUNCTION_EXISTS(vfork    HAVE_WORKING_VFORK)
-CHECK_FUNCTION_EXISTS(fdopen   HAVE_FDOPEN)
-CHECK_FUNCTION_EXISTS(strdup   HAVE_STRDUP)
-CHECK_FUNCTION_EXISTS(getpwnam HAVE_GETPWNAM) 
-CHECK_FUNCTION_EXISTS(select   HAVE_SELECT)
-CHECK_FUNCTION_EXISTS(strerror HAVE_STRERROR) 
-CHECK_FUNCTION_EXISTS(sysconf  HAVE_SYSCONF)
-CHECK_FUNCTION_EXISTS(system   HAVE_SYSTEM)
-
-INCLUDE(CheckIncludeFiles)
-CHECK_INCLUDE_FILES(float.h     HAVE_FLOAT_H)
-CHECK_INCLUDE_FILES(sys/dir.h   HAVE_SYS_DIR_H)
-CHECK_INCLUDE_FILES(sys/ndir.h  HAVE_SYS_NDIR_H)
-CHECK_INCLUDE_FILES(sys/stat.h  HAVE_SYS_STAT_H)
-CHECK_INCLUDE_FILES(sys/types.h HAVE_SYS_TYPES_H)
-CHECK_INCLUDE_FILES(sys/wait.h  HAVE_SYS_WAIT_H)
-CHECK_INCLUDE_FILES(values.h    HAVE_VALUES_H)
-CHECK_INCLUDE_FILES(unistd.h    HAVE_UNISTD_H)
-CHECK_INCLUDE_FILES(dirent.h    HAVE_DIRENT_H)
-CHECK_INCLUDE_FILES(memory.h    HAVE_MEMORY_H)
-CHECK_INCLUDE_FILES(stdlib.h    HAVE_STDLIB_H)
-CHECK_INCLUDE_FILES(fcntl.h     HAVE_FCNTL_H)
-CHECK_INCLUDE_FILES(dlfcn.h     HAVE_DLFCN_H)
-CHECK_INCLUDE_FILES(vfork.h     HAVE_VFORK_H)
-CHECK_INCLUDE_FILES(inttypes.h  HAVE_INTTYPES_H)
-CHECK_INCLUDE_FILES(string.h    HAVE_STRING_H)
-CHECK_INCLUDE_FILES(strings.h   HAVE_STRINGS_H)
-CHECK_INCLUDE_FILES(pwd.h       HAVE_PWD_H)
-
-ADD_DEFINITIONS(-DHAVE_CONFIG_H)
-
-# aliases
-SET(VERSION "${PACKAGE_VERSION}")
-
-IF(MINC2_BUILD_EZMINC)
-  set(MINC2_INCLUDE_DIRS_CONFIG    
-    ${CMAKE_CURRENT_SOURCE_DIR}/ezminc
-  )
-  INCLUDE_DIRECTORIES(
-    ${CMAKE_CURRENT_SOURCE_DIR}/ezminc
-   )
-ENDIF(MINC2_BUILD_EZMINC)
+IF(GSL_FOUND)
 
-# netcdf and HDF5
-
-IF(MINC2_BUILD_V2)
-  FIND_PACKAGE(ZLIB REQUIRED)
-  SET(MINC2 "1")
-ELSE(BUILD_MINC2)
-  SET(MINC2 "0")
-ENDIF(MINC2_BUILD_V2)
-
-# config files for build
-CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/config.h.cmake ${CMAKE_CURRENT_BINARY_DIR}/config.h @ONLY)
-
-# others
-CONFIGURE_FILE(${CMAKE_CURRENT_SOURCE_DIR}/epm-header.in ${CMAKE_CURRENT_BINARY_DIR}/epm-header)
-
-# set the master INCLUDE directories
-INCLUDE_DIRECTORIES(
-   ${CMAKE_CURRENT_SOURCE_DIR}
-   ${CMAKE_CURRENT_BINARY_DIR}
-   ${CMAKE_CURRENT_SOURCE_DIR}/libsrc
-   ${CMAKE_CURRENT_SOURCE_DIR}/volume_io/Include
-   )
-
-INCLUDE_DIRECTORIES( ${NETCDF_INCLUDE_DIR} )
-
-IF(MINC2_BUILD_V2)
-  INCLUDE_DIRECTORIES(${CMAKE_CURRENT_SOURCE_DIR}/libsrc2 )
-ENDIF(MINC2_BUILD_V2)
+  INCLUDE_DIRECTORIES( 
+    ${GSL_INCLUDE_DIRS}
+    ${CMAKE_CURRENT_SOURCE_DIR}/tools
+  )
 
-# some variables
-SET(minc1_LIB_SRCS
-   libsrc/ParseArgv.c
-   libsrc/dim_conversion.c
-   libsrc/image_conversion.c
-   libsrc/minc_convenience.c
-   libsrc/minc_error.c
-   libsrc/nd_loop.c
-   libsrc/netcdf_convenience.c
-   libsrc/time_stamp.c
-   libsrc/value_conversion.c
-   libsrc/voxel_loop.c
-   libsrc/hdf_convenience.c
-   libsrc/minc_compat.c
-   libsrc/minc_simple.c
-   libsrc/read_file_names.c
-   )
+  IF(BUILD_MINCNLM)
+    ADD_SUBDIRECTORY(mincnlm)
+  ENDIF(BUILD_MINCNLM)
+ENDIF(GSL_FOUND)
 
-SET(minc1_HEADERS
-  libsrc/minc.h 
-  libsrc/ParseArgv.h 
-  libsrc/voxel_loop.h 
-  libsrc/nd_loop.h
-  libsrc/time_stamp.h
-  libsrc/minc_compat.h
-  volume_io/Include/volume_io.h
-  libsrc/minc_simple.h
-)
-
-SET(minc2_LIB_SRCS
-   libsrc2/convert.c
-   libsrc2/datatype.c
-   libsrc2/dimension.c
-   libsrc2/free.c
-   libsrc2/grpattr.c
-   libsrc2/hyper.c
-   libsrc2/label.c
-   libsrc2/m2util.c
-   libsrc2/record.c
-   libsrc2/slice.c
-   libsrc2/valid.c
-   libsrc2/volprops.c
-   libsrc2/volume.c
-   )
-
-SET(minc2_HEADERS
-  libsrc2/minc2.h
-)
+IF(FFTW3F_FOUND)
+  INCLUDE_DIRECTORIES( ${FFTW3F_INCLUDE_DIRS})
+ENDIF(FFTW3F_FOUND)
 
-# volume_io2
-SET(volume_io_LIB_SRCS
-   volume_io/Geometry/colour.c
-   volume_io/Geometry/colour_def.c
-   volume_io/Geometry/gaussian.c
-   volume_io/Geometry/inverse.c
-   volume_io/Geometry/newton.c
-   volume_io/Geometry/points.c
-   volume_io/Geometry/splines.c
-   volume_io/Geometry/tensors.c
-   volume_io/Geometry/transforms.c
-   volume_io/MNI_formats/gen_xf_io.c
-   volume_io/MNI_formats/gen_xfs.c
-   volume_io/MNI_formats/grid_transforms.c
-   volume_io/MNI_formats/mni_io.c
-   volume_io/MNI_formats/tag_points.c
-   volume_io/MNI_formats/thin_plate_spline.c
-   volume_io/Prog_utils/alloc.c
-   volume_io/Prog_utils/alloc_check.c
-   volume_io/Prog_utils/arrays.c
-   volume_io/Prog_utils/files.c
-   volume_io/Prog_utils/print.c
-   volume_io/Prog_utils/progress.c
-   volume_io/Prog_utils/string.c
-   volume_io/Prog_utils/time.c
-   volume_io/Volumes/evaluate.c
-   volume_io/Volumes/get_hyperslab.c
-   volume_io/Volumes/input_free.c
-   volume_io/Volumes/input_mnc.c
-   volume_io/Volumes/input_volume.c
-   volume_io/Volumes/multidim_arrays.c
-   volume_io/Volumes/output_mnc.c
-   volume_io/Volumes/output_volume.c
-   volume_io/Volumes/set_hyperslab.c
-   volume_io/Volumes/volume_cache.c
-   volume_io/Volumes/volumes.c
-)
+IF(BUILD_EZMINC_TOOLS )
+  ADD_SUBDIRECTORY(tools)
+ENDIF(BUILD_EZMINC_TOOLS)
 
-SET(volume_io_HEADERS
-    volume_io/Include/volume_io/alloc.h
-    volume_io/Include/volume_io/arrays.h 
-    volume_io/Include/volume_io/basic.h 
-    volume_io/Include/volume_io/def_math.h 
-    volume_io/Include/volume_io/files.h 
-    volume_io/Include/volume_io/geom_structs.h 
-    volume_io/Include/volume_io/geometry.h 
-    volume_io/Include/internal_volume_io.h 
-    volume_io/Include/volume_io/multidim.h 
-    volume_io/Include/volume_io/progress.h 
-    volume_io/Include/volume_io/string_funcs.h 
-    volume_io/Include/volume_io/system_dependent.h 
-    volume_io/Include/volume_io/transforms.h 
-    volume_io/Include/volume_io/vol_io_prototypes.h 
-    volume_io/Include/volume_io/volume.h 
-    volume_io/Include/volume_io/volume_cache.h
-)
-
-SET(MINC2_LIBRARY minc)
-SET(VOLUME_IO_LIBRARY volume_io)
-
-SET(MINC2_LIBRARIES ${MINC2_LIBRARY} ${NETCDF_LIBRARY})
-
-#SET(MINC2_DEPENDENCIES "")
-
-IF(MINC2_BUILD_V2)
-
-  INCLUDE_DIRECTORIES( ${HDF5_INCLUDE_DIR} )
-
-  SET(minc_LIB_SRCS ${minc1_LIB_SRCS} ${minc2_LIB_SRCS})
-  SET(minc_HEADERS ${minc1_HEADERS} ${minc2_HEADERS})
-  SET(MINC2_LIBRARY minc2)
-  SET(MINC2_LIBRARIES ${MINC2_LIBRARY} ${HDF5_LIBRARY} ${NETCDF_LIBRARY} ${ZLIB_LIBRARIES}  m )
-  SET(VOLUME_IO_LIBRARY volume_io2)
-  
-ELSE(MINC2_BUILD_V2)
-  SET(minc_LIB_SRCS ${minc1_LIB_SRCS} )
-  SET(minc_HEADERS ${minc1_HEADERS} ${minc2_HEADERS})
-ENDIF(MINC2_BUILD_V2)
+IF(GSL_FOUND AND BUILD_DISTORTION_CORRECTION)
+  ADD_SUBDIRECTORY( distortion_correction )
+ENDIF(GSL_FOUND AND BUILD_DISTORTION_CORRECTION)
 
-
-ADD_LIBRARY(${MINC2_LIBRARY} ${LIBRARY_TYPE} ${minc_LIB_SRCS} )
-TARGET_LINK_LIBRARIES(${MINC2_LIBRARY} ${NETCDF_LIBRARY} ${HDF5_LIBRARY} ${ZLIB_LIBRARIES} m )
-
-ADD_LIBRARY(${VOLUME_IO_LIBRARY} ${LIBRARY_TYPE} ${volume_io_LIB_SRCS})
-
-SET_TARGET_PROPERTIES(${MINC2_LIBRARY}     PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${MINC2_PACKAGE_VERSION_MAJOR})
-SET_TARGET_PROPERTIES(${VOLUME_IO_LIBRARY} PROPERTIES VERSION ${PACKAGE_VERSION} SOVERSION ${MINC2_PACKAGE_VERSION_MAJOR})
-
-ADD_DEPENDENCIES(${VOLUME_IO_LIBRARY} ${MINC2_LIBRARY})
-
-INSTALL(TARGETS ${MINC2_LIBRARY}     ${LIBRARY_INSTALL} DESTINATION lib)
-INSTALL(TARGETS ${VOLUME_IO_LIBRARY} ${LIBRARY_INSTALL} DESTINATION lib)
-INSTALL(FILES   ${minc2_HEADERS}     DESTINATION  include  )
-INSTALL(FILES   ${volume_io_HEADERS} DESTINATION include/volume_io)
+IF(BUILD_MRFSEG)
+  ADD_SUBDIRECTORY(mrfseg)
+ENDIF(BUILD_MRFSEG)
 
-IF(MINC2_BUILD_TOOLS)
-  ADD_SUBDIRECTORY( progs )
-ENDIF(MINC2_BUILD_TOOLS)
-
-IF(MINC2_BUILD_CONVERTERS)
-  ADD_SUBDIRECTORY( conversion )
-ENDIF(MINC2_BUILD_CONVERTERS)
-
-IF(MINC2_BUILD_EZMINC)
-  ADD_SUBDIRECTORY( ezminc )
-ENDIF(MINC2_BUILD_EZMINC)
-
-# config for the build directory
-set(MINC2_USE_FILE_CONFIG  ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake)
-
-set(MINC2_INCLUDE_DIRS_CONFIG
-  ${CMAKE_CURRENT_SOURCE_DIR}
-  ${CMAKE_CURRENT_SOURCE_DIR}/libsrc
-  ${CMAKE_CURRENT_SOURCE_DIR}/volume_io/Include
-)
+IF(ITK_FOUND)
 
-IF(MINC2_BUILD_V2)
-  set(MINC2_INCLUDE_DIRS_CONFIG
-    ${MINC2_INCLUDE_DIRS_CONFIG}
-    ${CMAKE_CURRENT_SOURCE_DIR}/libsrc2
-  )
-ENDIF(MINC2_BUILD_V2)
-
-IF(MINC2_BUILD_EZMINC)
-  SET(EZMINC_LIBRARIES minc_io ${MINC2_LIBRARIES})
-ENDIF(MINC2_BUILD_EZMINC)
-
-set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_CURRENT_BINARY_DIR})
-
-configure_file(MINC2Config.cmake.in
-  ${CMAKE_CURRENT_BINARY_DIR}/MINC2Config.cmake @ONLY )
-
-configure_file(UseMINC2.cmake.in
-  ${CMAKE_CURRENT_BINARY_DIR}/UseMINC2.cmake @ONLY)
+  OPTION(BUILD_EZMINC_TOOLS "Build additional tools , requires GSL" OFF)
 
-# config for install dir
-set(MINC2_USE_FILE_CONFIG "${CMAKE_INSTALL_PREFIX}/lib/UseMINC2.cmake")
-
-set(MINC2_INCLUDE_DIRS_CONFIG ${CMAKE_INSTALL_PREFIX}/include )
-
-set(MINC2_LIBRARY_DIRS_CONFIG ${CMAKE_INSTALL_PREFIX}/lib)
-
-configure_file(MINC2Config.cmake.in
-  ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake @ONLY )
+  IF(BUILD_DD)
+    ADD_SUBDIRECTORY(diff_demons)
+  ENDIF(BUILD_DD)
 
-configure_file(UseMINC2.cmake.in
-  ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake @ONLY)
-
-INSTALL(FILES 
-   ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/UseMINC2.cmake 
-   ${CMAKE_CURRENT_BINARY_DIR}/CMakeFiles/MINC2Config.cmake
-  DESTINATION lib
-  COMPONENT Development)
-
-# testing
-IF(BUILD_TESTING)
-  ADD_SUBDIRECTORY(testdir)
-ENDIF(BUILD_TESTING)
+ENDIF(ITK_FOUND)
--- a/config.h.cmake
+++ b/config.h.cmake
@@ -9,46 +9,46 @@
 
 #define H5Acreate_vers 2
 
-#cmakedefine01 HAVE_MKSTEMP 
-#cmakedefine01 HAVE_STRERROR 
-#cmakedefine01 HAVE_FLOAT_H 
+#cmakedefine HAVE_MKSTEMP 1 
+#cmakedefine HAVE_STRERROR 1 
+#cmakedefine HAVE_FLOAT_H 1 
 
-#cmakedefine01 HAVE_DIRENT_H 
-#cmakedefine01 HAVE_DLFCN_H 
-#cmakedefine01 HAVE_FCNTL_H 
-#cmakedefine01 HAVE_FORK 
-#cmakedefine01 HAVE_GETPWNAM 
-#cmakedefine01 HAVE_INT16_T 
-#cmakedefine01 HAVE_INT32_T 
-#cmakedefine01 HAVE_INTTYPES_H 
-#cmakedefine01 HAVE_MEMORY_H 
-#cmakedefine01 HAVE_MKSTEMP 
-#cmakedefine01 HAVE_NDIR_H 
-#cmakedefine01 HAVE_POPEN 
-#cmakedefine01 HAVE_PWD_H 
-#cmakedefine01 HAVE_SELECT 
-#cmakedefine01 HAVE_STDINT_H 
-#cmakedefine01 HAVE_STDLIB_H 
-#cmakedefine01 HAVE_STRDUP 
-#cmakedefine01 HAVE_SYSCONF 
-#cmakedefine01 HAVE_SYSTEM 
-#cmakedefine01 HAVE_SYS_DIR_H 
-#cmakedefine01 HAVE_SYS_NDIR_H 
-#cmakedefine01 HAVE_SYS_STAT_H 
-#cmakedefine01 HAVE_SYS_TIME_H 
-#cmakedefine01 HAVE_SYS_TYPES_H 
-#cmakedefine01 HAVE_SYS_WAIT_H 
-#cmakedefine01 HAVE_TEMPNAM 
-#cmakedefine01 HAVE_TMPNAM 
-#cmakedefine01 HAVE_UNISTD_H 
-#cmakedefine01 HAVE_VALUES_H 
-#cmakedefine01 HAVE_VFORK 
-#cmakedefine01 HAVE_VFORK_H 
-#cmakedefine01 HAVE_WORKING_FORK 
-#cmakedefine01 HAVE_WORKING_VFORK 
-#cmakedefine01 HAVE_ZLIB 
-#cmakedefine01 HAVE_STRINGS_H 
-#cmakedefine01 HAVE_STRING_H 
+#cmakedefine HAVE_DIRENT_H 1 
+#cmakedefine HAVE_DLFCN_H 1 
+#cmakedefine HAVE_FCNTL_H 1 
+#cmakedefine HAVE_FORK 1 
+#cmakedefine HAVE_GETPWNAM 1 
+#cmakedefine HAVE_INT16_T 1 
+#cmakedefine HAVE_INT32_T 1 
+#cmakedefine HAVE_INTTYPES_H 1 
+#cmakedefine HAVE_MEMORY_H 1 
+#cmakedefine HAVE_MKSTEMP 1 
+#cmakedefine HAVE_NDIR_H 1 
+#cmakedefine HAVE_POPEN 1 
+#cmakedefine HAVE_PWD_H 1 
+#cmakedefine HAVE_SELECT 1 
+#cmakedefine HAVE_STDINT_H 1 
+#cmakedefine HAVE_STDLIB_H 1 
+#cmakedefine HAVE_STRDUP 1 
+#cmakedefine HAVE_SYSCONF 1 
+#cmakedefine HAVE_SYSTEM 1 
+#cmakedefine HAVE_SYS_DIR_H 1 
+#cmakedefine HAVE_SYS_NDIR_H 1 
+#cmakedefine HAVE_SYS_STAT_H 1 
+#cmakedefine HAVE_SYS_TIME_H 1 
+#cmakedefine HAVE_SYS_TYPES_H 1 
+#cmakedefine HAVE_SYS_WAIT_H 1 
+#cmakedefine HAVE_TEMPNAM 1 
+#cmakedefine HAVE_TMPNAM 1 
+#cmakedefine HAVE_UNISTD_H 1 
+#cmakedefine HAVE_VALUES_H 1 
+#cmakedefine HAVE_VFORK 1 
+#cmakedefine HAVE_VFORK_H 1 
+#cmakedefine HAVE_WORKING_FORK 1 
+#cmakedefine HAVE_WORKING_VFORK 1 
+#cmakedefine HAVE_ZLIB 1 
+#cmakedefine HAVE_STRINGS_H 1 
+#cmakedefine HAVE_STRING_H 1 
 
 #define H5Acreate_vers 2