--- a/Makefile.am
+++ b/Makefile.am
@@ -16,6 +16,8 @@
 	$(POD2MAN) --section=1 $< > $@
 progs/minchistory/minchistory.man1: progs/minchistory/minchistory
 	$(POD2MAN) --section=1 $< > $@
+progs/mincpik/mincpik.man1: progs/mincpik/mincpik
+	$(POD2MAN) --section=1 $< > $@
 
 # Add these to the include searches.
 #
@@ -172,13 +174,13 @@
 	progs/mincdiff/mincdiff \
 	progs/mincedit/mincedit \
 	progs/mincheader/mincheader \
-	progs/mincpik/mincpik \
 	progs/mincview/mincview
 
 # Scripts that we process (to add version #s) before install
 bin_SCRIPTS = \
 	progs/minccomplete/minccomplete \
 	progs/minchistory/minchistory \
+	progs/mincpik/mincpik \
    progs/xfm/xfmflip
 
 # Programs we build and install.
@@ -243,6 +245,7 @@
 	$(m4_files) \
 	progs/minccomplete/minccomplete.in \
 	progs/minchistory/minchistory.in \
+	progs/mincpik/mincpik.in \
 	progs/xfm/xfmflip.in \
 	libsrc/strdup.c \
 	epm-header.in \

--- a/configure.in
+++ b/configure.in
@@ -103,5 +103,6 @@
 progs/xfm/xfmflip
 progs/minccomplete/minccomplete
 progs/minchistory/minchistory
+progs/mincpik/mincpik
 )
 

--- a/progs/mincpik/mincpik.man1
+++ b/progs/mincpik/mincpik.man1
@@ -1,108 +1,296 @@
-.\"                                      Hey, EMACS: -*- nroff -*-
-.TH MINCPIK 1 "$Date: 2009-08-11 13:49:19 $" "" "MINC User's Guide"
-
-.SH NAME
-mincpik \- generate images from minc files
-
-.SH SYNOPSIS
-.B mincpik
-[options] <infile>.mnc [<image.type>]
-
-.SH DESCRIPTION
-.I mincpik
-generates image files from MINC volumes using the Imagemagick
-convert utility. For a complete list of output file types see the
-convert man pages.
-
+.\" Automatically generated by Pod::Man 2.22 (Pod::Simple 3.07)
+.\"
+.\" Standard preamble:
+.\" ========================================================================
+.de Sp \" Vertical space (when we can't use .PP)
+.if t .sp .5v
+.if n .sp
+..
+.de Vb \" Begin verbatim text
+.ft CW
+.nf
+.ne \\$1
+..
+.de Ve \" End verbatim text
+.ft R
+.fi
+..
+.\" Set up some character translations and predefined strings.  \*(-- will
+.\" give an unbreakable dash, \*(PI will give pi, \*(L" will give a left
+.\" double quote, and \*(R" will give a right double quote.  \*(C+ will
+.\" give a nicer C++.  Capital omega is used to do unbreakable dashes and
+.\" therefore won't be available.  \*(C` and \*(C' expand to `' in nroff,
+.\" nothing in troff, for use with C<>.
+.tr \(*W-
+.ds C+ C\v'-.1v'\h'-1p'\s-2+\h'-1p'+\s0\v'.1v'\h'-1p'
+.ie n \{\
+.    ds -- \(*W-
+.    ds PI pi
+.    if (\n(.H=4u)&(1m=24u) .ds -- \(*W\h'-12u'\(*W\h'-12u'-\" diablo 10 pitch
+.    if (\n(.H=4u)&(1m=20u) .ds -- \(*W\h'-12u'\(*W\h'-8u'-\"  diablo 12 pitch
+.    ds L" ""
+.    ds R" ""
+.    ds C` ""
+.    ds C' ""
+'br\}
+.el\{\
+.    ds -- \|\(em\|
+.    ds PI \(*p
+.    ds L" ``
+.    ds R" ''
+'br\}
+.\"
+.\" Escape single quotes in literal strings from groff's Unicode transform.
+.ie \n(.g .ds Aq \(aq
+.el       .ds Aq '
+.\"
+.\" If the F register is turned on, we'll generate index entries on stderr for
+.\" titles (.TH), headers (.SH), subsections (.SS), items (.Ip), and index
+.\" entries marked with X<> in POD.  Of course, you'll have to process the
+.\" output yourself in some meaningful fashion.
+.ie \nF \{\
+.    de IX
+.    tm Index:\\$1\t\\n%\t"\\$2"
+..
+.    nr % 0
+.    rr F
+.\}
+.el \{\
+.    de IX
+..
+.\}
+.\"
+.\" Accent mark definitions (@(#)ms.acc 1.5 88/02/08 SMI; from UCB 4.2).
+.\" Fear.  Run.  Save yourself.  No user-serviceable parts.
+.    \" fudge factors for nroff and troff
+.if n \{\
+.    ds #H 0
+.    ds #V .8m
+.    ds #F .3m
+.    ds #[ \f1
+.    ds #] \fP
+.\}
+.if t \{\
+.    ds #H ((1u-(\\\\n(.fu%2u))*.13m)
+.    ds #V .6m
+.    ds #F 0
+.    ds #[ \&
+.    ds #] \&
+.\}
+.    \" simple accents for nroff and troff
+.if n \{\
+.    ds ' \&
+.    ds ` \&
+.    ds ^ \&
+.    ds , \&
+.    ds ~ ~
+.    ds /
+.\}
+.if t \{\
+.    ds ' \\k:\h'-(\\n(.wu*8/10-\*(#H)'\'\h"|\\n:u"
+.    ds ` \\k:\h'-(\\n(.wu*8/10-\*(#H)'\`\h'|\\n:u'
+.    ds ^ \\k:\h'-(\\n(.wu*10/11-\*(#H)'^\h'|\\n:u'
+.    ds , \\k:\h'-(\\n(.wu*8/10)',\h'|\\n:u'
+.    ds ~ \\k:\h'-(\\n(.wu-\*(#H-.1m)'~\h'|\\n:u'
+.    ds / \\k:\h'-(\\n(.wu*8/10-\*(#H)'\z\(sl\h'|\\n:u'
+.\}
+.    \" troff and (daisy-wheel) nroff accents
+.ds : \\k:\h'-(\\n(.wu*8/10-\*(#H+.1m+\*(#F)'\v'-\*(#V'\z.\h'.2m+\*(#F'.\h'|\\n:u'\v'\*(#V'
+.ds 8 \h'\*(#H'\(*b\h'-\*(#H'
+.ds o \\k:\h'-(\\n(.wu+\w'\(de'u-\*(#H)/2u'\v'-.3n'\*(#[\z\(de\v'.3n'\h'|\\n:u'\*(#]
+.ds d- \h'\*(#H'\(pd\h'-\w'~'u'\v'-.25m'\f2\(hy\fP\v'.25m'\h'-\*(#H'
+.ds D- D\\k:\h'-\w'D'u'\v'-.11m'\z\(hy\v'.11m'\h'|\\n:u'
+.ds th \*(#[\v'.3m'\s+1I\s-1\v'-.3m'\h'-(\w'I'u*2/3)'\s-1o\s+1\*(#]
+.ds Th \*(#[\s+2I\s-2\h'-\w'I'u*3/5'\v'-.3m'o\v'.3m'\*(#]
+.ds ae a\h'-(\w'a'u*4/10)'e
+.ds Ae A\h'-(\w'A'u*4/10)'E
+.    \" corrections for vroff
+.if v .ds ~ \\k:\h'-(\\n(.wu*9/10-\*(#H)'\s-2\u~\d\s+2\h'|\\n:u'
+.if v .ds ^ \\k:\h'-(\\n(.wu*10/11-\*(#H)'\v'-.4m'^\v'.4m'\h'|\\n:u'
+.    \" for low resolution devices (crt and lpr)
+.if \n(.H>23 .if \n(.V>19 \
+\{\
+.    ds : e
+.    ds 8 ss
+.    ds o a
+.    ds d- d\h'-1'\(ga
+.    ds D- D\h'-1'\(hy
+.    ds th \o'bp'
+.    ds Th \o'LP'
+.    ds ae ae
+.    ds Ae AE
+.\}
+.rm #[ #] #H #V #F C
+.\" ========================================================================
+.\"
+.IX Title "MINCPIK 1"
+.TH MINCPIK 1 "2012-03-12" "perl v5.10.1" "User Contributed Perl Documentation"
+.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
+.\" way too many mistakes in technical documents.
+.if n .ad l
+.nh
+.SH "NAME"
+\&\fBmincpik\fR \- generate images from minc files
+.SH "SYNOPSIS"
+.IX Header "SYNOPSIS"
+\&\fBmincpik\fR [options] <infile>.mnc [<image.type>]
+.PP
+mincpik generates image files from \s-1MINC\s0 volumes using the Imagemagick
+convert utility. Use \-help or \-man for more information and examples
+.SH "DESCRIPTION"
+.IX Header "DESCRIPTION"
+\&\fBmincpik\fR generates image files from \s-1MINC\s0 volumes using the Imagemagick
+\&\fBconvert\fR utility. For a complete list of output file types see the
+\&\fBconvert\fR man pages.
+.PP
+\&\s-1EXAMPLES:\s0
+To display a default view, axial (z) slicing, middle slice
+using display. (display is part of the Imagemagick package)
+.PP
+.Vb 1
+\&   mincpik infile.mnc PNG:\- | display \-
+.Ve
+.PP
+To generate a \s-1PNG\s0 file of the 15th coronal slice
+.PP
+.Vb 1
+\&   mincpik \-slice 15 \-coronal infile.mnc outfile.png
+.Ve
+.PP
+To generate a \s-1JPG\s0 file using the hotmetal lookup table 
+with the image range 0 to 100
+.PP
+.Vb 1
+\&   mincpik \-lookup \*(Aq\-hotmetal\*(Aq \-image_range 0 100 infile.mnc outfile.jpg
+.Ve
+.PP
+ImageMagick:  http://www.wizards.dupont.com/cristy/ImageMagick.html
+   \s-1NB:\s0 ImageMagick should be compiled without 16\-bit quanta.
+.PP
 Currently if there is a time dimension in the file the image will
 only produced from the first time point
-
-.SH General options
-.TP
-\fB\-verbose\fR
-print out extra information
-.TP
-\fB\-clobber\fR
+.PP
+Problems or comments should be sent to: a.janke\e@gmail.com
+.SH "OPTIONS"
+.IX Header "OPTIONS"
+.IP "\fB\-v\fR, \fB\-\-verbose\fR" 4
+.IX Item "-v, --verbose"
+Be noisy when doing things
+.IP "\fB\-\-version\fR" 4
+.IX Item "--version"
+Print version number and exit
+.IP "\fB\-?\fR, \fB\-\-help\fR" 4
+.IX Item "-?, --help"
+Dump some quick help output
+.IP "\fB\-\-man\fR" 4
+.IX Item "--man"
+Dump a man page
+.IP "\fB\-c\fR \fB\-\-clobber\fR" 4
+.IX Item "-c --clobber"
 overwrite the output file if it exists already
-.TP
-\fB\-fake\fR
-usually used in combination with -verbose to echo commands only
-.TP
-\fB\-slice\fR
-slice number to get (note this is in voxel co-ordinates)
-.TP
-\fB\-scale\fR
+.IP "\fB\-f\fR \fB\-\-fake\fR" 4
+.IX Item "-f --fake"
+do a dry run, (echo cmds only). This is usually used in combination with \-verbose to echo commands only
+.IP "\fB\-\-scale\fR" 4
+.IX Item "--scale"
 scaling factor for resulting image, by default images are output 
 at twice their original resolution
-.TP
-\fB\-width\fR
+.IP "\fB\-\-width\fR" 4
+.IX Item "--width"
 autoscale the resulting image to have a fixed image width (in pixels)
-.TP
-\fB\-depth\fR
-bit-depth for resulting image 8 or 16 (MSB machines only)
-.TP
-\fB\-title\fR
+.IP "\fB\-\-depth\fR" 4
+.IX Item "--depth"
+bitdepth for resulting image 8 or 16 (\s-1MSB\s0 machines only!)
+.IP "\fB\-\-title\fR" 4
+.IX Item "--title"
 add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file.
-\fB\-title_text\fR
-specify the title text to use. This option must be used in conjunction with -title
-.TP
-.SH Image range and lookup table options
-.TP
-\fB\-range\fR\ \fImin max\fR
-valid range of values to use from MINC file
-.TP
-\fB\-image_range\fR\ \fImin max\fR
+.IP "\fB\-\-title_text\fR" 4
+.IX Item "--title_text"
+use the input string for the title [default: input\-filename]. This option must be used in conjunction with \-title
+.IP "\fB\-\-title_size\fR" 4
+.IX Item "--title_size"
+font point size for the title
+.IP "\fB\-\-anot_bar\fR" 4
+.IX Item "--anot_bar"
+create an annotated bar to match the image (use height of the output image)
+.PP
+\fIImage range and lookup table options\fR
+.IX Subsection "Image range and lookup table options"
+.IP "\fB\-\-range\fR" 4
+.IX Item "--range"
+valid range of values for \s-1MINC\s0 file
+.IP "\fB\-\-image_range\fR" 4
+.IX Item "--image_range"
 range of image values to use for pixel intensity
-.TP
-\fB\-auto_range\fR
+.IP "\fB\-\-auto_range\fR" 4
+.IX Item "--auto_range"
 automatically determine image range using a 5 and 95% PcT. (histogram)
-.TP
-\fB\-lookup\fR\ \fIarguments\fR
+.IP "\fB\-\-lookup\fR" 4
+.IX Item "--lookup"
 arguments to pass to minclookup
-
-.SH Slicing options
-.TP
-\fB\-transverse\fR
-get a transverse slice
-.TP
-\fB\-axial\fR
-synonym for transverse
-.TP
-\fB\-coronal\fR
-get a coronal slice
-.TP
-\fB\-sagittal\fR
-get a sagital slice
-.TP
-\fB\-allthree\fR
-this option is deprecated, use -triplanar instead
-
-.SH Triplanar options
-.TP
-\fB\-triplanar\fR
-create a triplanar view of the input MINC file
-.TP
-\fB\-tilesize\fR
+.PP
+\fISlicing options\fR
+.IX Subsection "Slicing options"
+.IP "\fB\-s\fR \fB\-\-slice\fR" 4
+.IX Item "-s --slice"
+slice number to get. (note this is in voxel co-ordinates)
+.IP "\fB\-z\fR \fB\-\-axial\fR \fB\-\-transverse\fR" 4
+.IX Item "-z --axial --transverse"
+get an axial/transverse (z) slice
+.IP "\fB\-y\fR \fB\-\-coronal\fR" 4
+.IX Item "-y --coronal"
+get a coronal (y) slice
+.IP "\fB\-x\fR \fB\-\-sagittal\fR" 4
+.IX Item "-x --sagittal"
+get a sagital (x) slice
+.PP
+\fITriplanar options\fR
+.IX Subsection "Triplanar options"
+.IP "\fB\-t\fR \fB\-\-triplanar\fR" 4
+.IX Item "-t --triplanar"
+create a triplanar view of the input file
+.IP "\fB\-\-tilesize\fR" 4
+.IX Item "--tilesize"
 pixel size for each image in a triplanar
-.TP
-\fB\-sagittal_offset\fR
-offset the saggital slice from the centre in the triplanar
-.TP
-\fB\-vertical\fR
-create a vertical triplanar series of images (this is the default)
-.TP
-\fB\-horizontal\fR
-create a horizontal triplanar instead of a vertical one
-
-.SH Generic options for all commands:
-.TP
-\fB\-help\fR
-Print summary of command-line options and abort.
-
-.SH AUTHOR
-Andrew Janke - <a.janke@gmail.com>
-
+.IP "\fB\-\-sagittal_offset\fR" 4
+.IX Item "--sagittal_offset"
+offset the sagittal slice from the centre
+.IP "\fB\-\-sagittal_offset_perc\fR" 4
+.IX Item "--sagittal_offset_perc"
+offset the sagittal slice by a percentage from the centre
+.IP "\fB\-\-vertical\fR" 4
+.IX Item "--vertical"
+create a vertical triplanar view (Default)
+.IP "\fB\-\-horizontal\fR" 4
+.IX Item "--horizontal"
+create a horizontal triplanar view
 .SH "SEE ALSO"
-.IR minclookup (1),
-.IR convert (1),
-.IR display (1).
+.IX Header "SEE ALSO"
+\&\fIconvert\fR\|(1) \fImincextract\fR\|(1) \fIdisplay\fR\|(1)
+.SH "AUTHOR"
+.IX Header "AUTHOR"
+Andrew Janke \- a.janke@gmail.com
+.SH "COPYRIGHTS"
+.IX Header "COPYRIGHTS"
+Copyright 2012 by Andrew L Janke
+.SH "POD ERRORS"
+.IX Header "POD ERRORS"
+Hey! \fBThe above document had some coding errors, which are explained below:\fR
+.IP "Around line 580:" 4
+.IX Item "Around line 580:"
+You forgot a '=back' before '=head3'
+.IP "Around line 582:" 4
+.IX Item "Around line 582:"
+\&'=item' outside of any '=over'
+.IP "Around line 599:" 4
+.IX Item "Around line 599:"
+You forgot a '=back' before '=head3'
+.IP "Around line 601:" 4
+.IX Item "Around line 601:"
+\&'=item' outside of any '=over'
+.IP "Around line 618:" 4
+.IX Item "Around line 618:"
+You forgot a '=back' before '=head3'
+.IP "Around line 620:" 4
+.IX Item "Around line 620:"
+\&'=item' outside of any '=over'