annotate Makefile.am @ 2548:3f3e9cc93eee

* added a fix for histo calculation in otsu_threshold from Claude
author Andrew L Janke <a.janke@gmail.com>
date Wed, 07 Dec 2011 10:17:31 +1000
parents 1e2ede5b782d
children f99952fb216f
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1 # Makefile.am for MINC2
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2 #
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3 AUTOMAKE_OPTIONS = check-news subdir-objects
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4 ACLOCAL_AMFLAGS = -I m4
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5
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6 AM_CFLAGS =
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7 AM_YFLAGS = -d --debug
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8
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9 SUBDIRS = . volume_io testdir doc
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10 if MINC2
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11 SUBDIRS += libsrc2/test
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12 endif
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13
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14 # how to build man pages from POD
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15 progs/minccomplete/minccomplete.man1: progs/minccomplete/minccomplete
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16 $(POD2MAN) --section=1 $< > $@
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17 progs/minchistory/minchistory.man1: progs/minchistory/minchistory
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18 $(POD2MAN) --section=1 $< > $@
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19
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20 # Add these to the include searches.
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21 #
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22 INCLUDES = \
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23 -I$(top_srcdir)/libsrc \
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24 -I$(top_builddir)/volume_io/Include \
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25 -I$(top_srcdir)/volume_io/Include \
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26 -I$(top_srcdir)/progs/Proglib \
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27 -I$(top_srcdir)/conversion/Acr_nema
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28
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29 if MINC2
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30 INCLUDES += -I$(top_srcdir)/libsrc2
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31 endif
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32
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33 # Headers which must be installed.
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34 #
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35 include_HEADERS = \
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36 libsrc/minc.h \
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37 libsrc/ParseArgv.h \
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38 libsrc/voxel_loop.h \
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39 libsrc/nd_loop.h \
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40 libsrc/time_stamp.h \
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41 libsrc/minc_compat.h \
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42 volume_io/Include/volume_io.h \
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43 libsrc2/minc2.h \
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44 libsrc/minc_simple.h
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45
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46 include_volume_iodir = $(includedir)/volume_io
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47
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48 include_volume_io_HEADERS = \
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49 volume_io/Include/volume_io/alloc.h \
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50 volume_io/Include/volume_io/arrays.h \
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51 volume_io/Include/volume_io/basic.h \
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52 volume_io/Include/volume_io/def_math.h \
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53 volume_io/Include/volume_io/files.h \
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54 volume_io/Include/volume_io/geom_structs.h \
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55 volume_io/Include/volume_io/geometry.h \
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56 volume_io/Include/internal_volume_io.h \
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57 volume_io/Include/volume_io/multidim.h \
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58 volume_io/Include/volume_io/progress.h \
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59 volume_io/Include/volume_io/string_funcs.h \
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60 volume_io/Include/volume_io/system_dependent.h \
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61 volume_io/Include/volume_io/transforms.h \
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62 volume_io/Include/volume_io/vol_io_prototypes.h \
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63 volume_io/Include/volume_io/volume.h \
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64 volume_io/Include/volume_io/volume_cache.h
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65
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66 # Header files which must be included in the distribution but which are
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67 # not part of the installation.
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68 #
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69 noinst_HEADERS = \
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70 libsrc/minc_basic.h \
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71 libsrc/minc_config.h \
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72 libsrc/minc_error.h \
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73 libsrc/minc_private.h \
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74 libsrc/minc_routines.h \
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75 libsrc/minc_structures.h \
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76 libsrc/minc_useful.h \
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77 libsrc/minc_varlists.h \
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78 libsrc/type_limits.h \
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79 libsrc/hdf_convenience.h \
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80 progs/Proglib/convert_origin_to_start.h \
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81 progs/Proglib/minc_def.h \
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82 progs/minccalc/errx.h \
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83 progs/minccalc/node.h \
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84 progs/minccalc/gram.h \
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85 progs/mincresample/mincresample.h \
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86 progs/mincreshape/mincreshape.h \
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87 libsrc2/minc2_private.h \
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88 progs/mincdump/mincdump.h \
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89 progs/mincdump/dumplib.h \
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90 progs/mincdump/vardata.h \
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91 progs/mincgen/generic.h \
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92 progs/mincgen/genlib.h \
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93 progs/mincgen/ncgen.h \
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94 progs/mincgen/ncgentab.h \
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95 conversion/ecattominc/ecat_file.h \
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96 conversion/ecattominc/machine_indep.h \
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97 conversion/ecattominc/ecat_header_definition.h \
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98 conversion/minctoecat/ecat_write.h \
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99 conversion/minctoecat/machine_indep.h \
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100 conversion/nifti1/nifti1.h \
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101 conversion/nifti1/nifti1_io.h \
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102 conversion/nifti1/nifti1_local.h \
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103 conversion/nifti1/znzlib.h \
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104 conversion/nifti1/analyze75.h \
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105 conversion/dcm2mnc/acr_element_defs.h \
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106 conversion/dcm2mnc/dcm2mnc.h \
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107 conversion/dcm2mnc/dicom_read.h \
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108 conversion/dcm2mnc/dicom_to_minc.h \
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109 conversion/dcm2mnc/ext_element_defs.h \
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110 conversion/dcm2mnc/minc_file.h \
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111 conversion/dcm2mnc/progress.h \
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112 conversion/dcm2mnc/siemens_to_dicom.h \
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113 conversion/dcm2mnc/siemens_header_defs.h \
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114 conversion/dcm2mnc/siemens_header_table.h \
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115 conversion/dcm2mnc/spi_element_defs.h \
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116 conversion/dcm2mnc/string_to_filename.h \
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117 conversion/dcm2mnc/pms_element_defs.h \
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118 conversion/dcm2mnc/gems_element_defs.h \
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119 conversion/vff2mnc/vff2mnc.h
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120
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121 if ACR_NEMA_TOOLS
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122 include_HEADERS += conversion/Acr_nema/acr_nema.h
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123
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124 include_acr_nemadir = $(includedir)/acr_nema
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125
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126 include_acr_nema_HEADERS = \
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127 conversion/Acr_nema/acr_nema/acr_io.h \
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128 conversion/Acr_nema/acr_nema/dicom_client_routines.h \
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129 conversion/Acr_nema/acr_nema/dicom_network.h \
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130 conversion/Acr_nema/acr_nema/element.h \
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131 conversion/Acr_nema/acr_nema/file_io.h \
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132 conversion/Acr_nema/acr_nema/group.h \
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133 conversion/Acr_nema/acr_nema/message.h \
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134 conversion/Acr_nema/acr_nema/value_repr.h
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135
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136 else
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137 #
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138 # If not installing the full ACR/NEMA package, just add these headers to
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139 # list of headers not to be installed.
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140 #
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141 noinst_HEADERS += \
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142 conversion/Acr_nema/acr_nema.h \
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143 conversion/Acr_nema/acr_nema/acr_io.h \
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144 conversion/Acr_nema/acr_nema/dicom_client_routines.h \
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145 conversion/Acr_nema/acr_nema/dicom_network.h \
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146 conversion/Acr_nema/acr_nema/element.h \
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147 conversion/Acr_nema/acr_nema/file_io.h \
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148 conversion/Acr_nema/acr_nema/group.h \
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149 conversion/Acr_nema/acr_nema/message.h \
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150 conversion/Acr_nema/acr_nema/value_repr.h
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151
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152 endif
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153
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154
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155 # Libraries which must be built and installed.
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156 #
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157 lib_LTLIBRARIES = libminc2.la libvolume_io2.la
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158
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159 # Conditionally install the libacr_nema.la library. It must always be
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160 # built even if it is not installed.
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161 #
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162 if ACR_NEMA_TOOLS
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163 lib_LTLIBRARIES += libacr_nema.la
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164 else
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165 noinst_LTLIBRARIES = libacr_nema.la
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166 endif
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167
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168 # Scripts we install: sh or perl.
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169 #
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170 dist_bin_SCRIPTS = \
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171 progs/mincdiff/mincdiff \
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172 progs/mincedit/mincedit \
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173 progs/mincheader/mincheader \
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174 progs/mincpik/mincpik \
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175 progs/mincview/mincview
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176
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177 # Scripts that we process (to add version #s) before install
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178 bin_SCRIPTS = \
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179 progs/minccomplete/minccomplete \
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180 progs/minchistory/minchistory \
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181 progs/xfm/xfmflip
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182
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183 # Programs we build and install.
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184 #
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185 bin_PROGRAMS = \
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186 voxeltoworld \
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187 worldtovoxel \
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188 minc_modify_header \
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189 mincaverage \
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190 minccalc \
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191 minccmp \
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192 mincconcat \
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193 minccopy \
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194 mincexpand \
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195 mincextract \
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196 mincgen \
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197 mincinfo \
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198 minclookup \
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199 mincmakescalar \
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200 mincmakevector \
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201 mincmath \
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202 mincresample \
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203 mincreshape \
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204 mincstats \
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205 minctoraw \
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206 invert_raw_image \
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207 mincwindow \
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208 rawtominc \
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209 transformtags \
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210 xfm2def \
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211 xfmconcat \
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212 xfminvert \
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213 mincconvert \
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214 mincdump \
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215 ecattominc \
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216 minctoecat \
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217 mnc2nii \
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218 nii2mnc \
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219 upet2mnc \
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220 dcm2mnc \
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221 vff2mnc
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222
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223 if ACR_NEMA_TOOLS
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224 bin_PROGRAMS += \
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225 acr_test \
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226 dump_acr_nema \
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227 extract_acr_nema \
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228 read_acr_nema \
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229 dicom_test \
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230 copy_acr_nema \
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231 byte_swap \
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232 extract
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233 endif
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234
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235 noinst_PROGRAMS = \
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236 mincexample1 \
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237 mincexample2
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238
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239 LDADD = libvolume_io2.la libminc2.la
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240
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241 EXTRA_DIST = \
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242 $(m4_files) \
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243 progs/minccomplete/minccomplete.in \
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244 progs/minchistory/minchistory.in \
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245 progs/xfm/xfmflip.in \
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246 libsrc/strdup.c \
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247 epm-header.in \
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248 libsrc/config.h.msvc-win32 \
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249 Makefile.msvc-win32 \
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250 conversion/Acr_nema/dicom.txt \
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251 INSTALL.minc \
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252 CMakeLists.txt \
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253 config.h.cmake \
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254 progs/CMakeLists.txt \
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255 conversion/CMakeLists.txt \
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256 cmake-modules/FindBISON.cmake \
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257 cmake-modules/FindFLEX.cmake \
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258 cmake-modules/FindHDF5.cmake \
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259 cmake-modules/FindMINC.cmake \
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260 cmake-modules/FindNETCDF.cmake
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261
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262 m4_files = \
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263 m4/mni_REQUIRE_LIB.m4 \
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264 m4/smr_WITH_BUILD_PATH.m4
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265
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266
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267 voxeltoworld_SOURCES = progs/coordinates/voxeltoworld.c
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268
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269 worldtovoxel_SOURCES = progs/coordinates/worldtovoxel.c
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270
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271 minc_modify_header_SOURCES = progs/minc_modify_header/minc_modify_header.c
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272
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273 mincaverage_SOURCES = progs/mincaverage/mincaverage.c
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274
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275 minccalc_CFLAGS = -Iprogs/minccalc -I$(srcdir)/progs/minccalc
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276 minccalc_SOURCES = \
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277 progs/minccalc/minccalc.c \
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278 progs/minccalc/gram.y \
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279 progs/minccalc/eval.c \
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280 progs/minccalc/ident.c \
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281 progs/minccalc/lex.l \
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282 progs/minccalc/node.c \
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283 progs/minccalc/optim.c \
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284 progs/minccalc/scalar.c \
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285 progs/minccalc/sym.c \
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286 progs/minccalc/vector.c
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287
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288 mincconcat_SOURCES = progs/mincconcat/mincconcat.c
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289
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290 minccopy_SOURCES = progs/minccopy/minccopy.c
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291
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292 minccmp_SOURCES = progs/minccmp/minccmp.c
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293
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294 mincexample1_SOURCES = progs/mincexample/mincexample1.c
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295
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296 mincexample2_SOURCES = progs/mincexample/mincexample2.c
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297
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298 mincexpand_SOURCES = progs/mincexpand/mincexpand.c
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299
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300 mincextract_SOURCES = progs/mincextract/mincextract.c
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301
1868
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302 mincgen_SOURCES = \
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303 progs/mincgen/escapes.c \
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parents: 1806
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304 progs/mincgen/genlib.c \
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305 progs/mincgen/getfill.c \
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306 progs/mincgen/init.c \
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307 progs/mincgen/load.c \
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308 progs/mincgen/main.c \
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309 progs/mincgen/ncgentab.y \
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310 progs/mincgen/ncgenyy.l
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311
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312
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313 mincinfo_SOURCES = progs/mincinfo/mincinfo.c
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314
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315 minclookup_SOURCES = progs/minclookup/minclookup.c
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316
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317 mincmakescalar_SOURCES = progs/mincmakescalar/mincmakescalar.c
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318
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319 mincmakevector_SOURCES = progs/mincmakevector/mincmakevector.c
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320
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321 mincmath_SOURCES = progs/mincmath/mincmath.c
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322
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323 mincresample_SOURCES = \
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324 progs/mincresample/mincresample.c \
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stever <stever>
parents:
diff changeset
325 progs/mincresample/resample_volumes.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
326 progs/Proglib/convert_origin_to_start.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
327
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
328 mincreshape_SOURCES = \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
329 progs/mincreshape/mincreshape.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
330 progs/mincreshape/copy_data.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
331
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
332 mincstats_SOURCES = progs/mincstats/mincstats.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
333
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
334 minctoraw_SOURCES = progs/minctoraw/minctoraw.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
335
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
336 invert_raw_image_SOURCES = progs/mincview/invert_raw_image.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
337
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
338 mincwindow_SOURCES = progs/mincwindow/mincwindow.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
339
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
340 rawtominc_SOURCES = \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
341 progs/rawtominc/rawtominc.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
342 progs/Proglib/convert_origin_to_start.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
343
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
344 transformtags_SOURCES = progs/xfm/transformtags.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
345
2513
42770fead03b * added xfm2def
rotor <rotor>
parents: 2506
diff changeset
346 xfm2def_SOURCES = progs/xfm/xfm2def.c
42770fead03b * added xfm2def
rotor <rotor>
parents: 2506
diff changeset
347
1504
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
348 xfmconcat_SOURCES = progs/xfm/xfmconcat.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
349
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
350 xfminvert_SOURCES = progs/xfm/xfminvert.c
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
351
1763
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
352 mincconvert_SOURCES = progs/mincconvert/mincconvert.c
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
353
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
354 mincdump_SOURCES = \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
355 progs/mincdump/mincdump.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
356 progs/mincdump/vardata.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
357 progs/mincdump/dumplib.c
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
358
1947
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
359 ecattominc_SOURCES = \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
360 conversion/ecattominc/ecattominc.c \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
361 conversion/ecattominc/insertblood.c \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
362 conversion/ecattominc/ecat_file.c \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
363 conversion/ecattominc/machine_indep.c
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
364
2055
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
365 minctoecat_SOURCES = \
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
366 conversion/minctoecat/minctoecat.c \
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
367 conversion/minctoecat/ecat_write.c \
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
368 conversion/minctoecat/machine_indep.c
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
369
1947
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
370 nii2mnc_SOURCES = \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
371 conversion/nifti1/nii2mnc.c \
2381
f53c551835c6 * added --debug to AM_YFLAGS for minccalc build (thanks Claude)
rotor <rotor>
parents: 2376
diff changeset
372 conversion/nifti1/nifti1_io.c \
f53c551835c6 * added --debug to AM_YFLAGS for minccalc build (thanks Claude)
rotor <rotor>
parents: 2376
diff changeset
373 conversion/nifti1/znzlib.c
1947
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
374
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
375 mnc2nii_SOURCES = \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
376 conversion/nifti1/mnc2nii.c \
2381
f53c551835c6 * added --debug to AM_YFLAGS for minccalc build (thanks Claude)
rotor <rotor>
parents: 2376
diff changeset
377 conversion/nifti1/nifti1_io.c \
f53c551835c6 * added --debug to AM_YFLAGS for minccalc build (thanks Claude)
rotor <rotor>
parents: 2376
diff changeset
378 conversion/nifti1/znzlib.c
1947
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
379
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
380 upet2mnc_SOURCES = \
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
381 conversion/micropet/upet2mnc.c
45a5d8d96de8 Add microPET, ECAT, and NIfTI-1 converters to the build
bert <bert>
parents: 1925
diff changeset
382
2138
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
383 dcm2mnc_LDADD = libacr_nema.la $(LDADD)
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
384
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
385 dcm2mnc_SOURCES = \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
386 conversion/dcm2mnc/dcm2mnc.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
387 conversion/dcm2mnc/dicom_to_minc.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
388 conversion/dcm2mnc/siemens_to_dicom.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
389 conversion/dcm2mnc/dicom_read.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
390 conversion/dcm2mnc/minc_file.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
391 conversion/dcm2mnc/progress.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
392 conversion/dcm2mnc/string_to_filename.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
393
2367
8caaa54d84ec Modified Makefile to build vff2mnc conversion utility
baghdadi <baghdadi>
parents: 2274
diff changeset
394 vff2mnc_SOURCES = \
8caaa54d84ec Modified Makefile to build vff2mnc conversion utility
baghdadi <baghdadi>
parents: 2274
diff changeset
395 conversion/vff2mnc/vff2mnc.c
8caaa54d84ec Modified Makefile to build vff2mnc conversion utility
baghdadi <baghdadi>
parents: 2274
diff changeset
396
2138
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
397 acr_test_LDADD = libacr_nema.la
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
398
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
399 acr_test_SOURCES = conversion/Acr_nema/acr_test.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
400
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
401 dump_acr_nema_LDADD = libacr_nema.la
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
402
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
403 dump_acr_nema_SOURCES = conversion/Acr_nema/dump_acr_nema.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
404
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
405 extract_acr_nema_LDADD = libacr_nema.la
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
406
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
407 extract_acr_nema_SOURCES = conversion/Acr_nema/extract_acr_nema.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
408
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
409 read_acr_nema_LDADD = libacr_nema.la
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
410
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
411 read_acr_nema_SOURCES = conversion/Acr_nema/read_acr_nema.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
412
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
413 dicom_test_LDADD = libacr_nema.la
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
414
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
415 dicom_test_SOURCES = conversion/Acr_nema/dicom_test.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
416
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
417 copy_acr_nema_LDADD = libacr_nema.la
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
418
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
419 copy_acr_nema_SOURCES = conversion/Acr_nema/copy_acr_nema.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
420
2274
5a3779559fad now building extract and byte_swap if building acr nema tools
jharlap <jharlap>
parents: 2266
diff changeset
421 extract_SOURCES = conversion/image_filters/extract.c
5a3779559fad now building extract and byte_swap if building acr nema tools
jharlap <jharlap>
parents: 2266
diff changeset
422 byte_swap_SOURCES = conversion/image_filters/byte_swap.c
2138
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
423
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
424
2518
1e2ede5b782d * final updates for 2.1.00 release
rotor <rotor>
parents: 2513
diff changeset
425 libminc2_la_LDFLAGS = -version-info 2:3:1
1763
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
426 libminc2_la_SOURCES = \
1504
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
427 libsrc/ParseArgv.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
428 libsrc/dim_conversion.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
429 libsrc/image_conversion.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
430 libsrc/minc_convenience.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
431 libsrc/minc_error.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
432 libsrc/nd_loop.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
433 libsrc/netcdf_convenience.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
434 libsrc/time_stamp.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
435 libsrc/value_conversion.c \
1763
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
436 libsrc/voxel_loop.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
437 libsrc/hdf_convenience.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
438 libsrc/minc_compat.c \
2189
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
439 libsrc/minc_simple.c
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
440
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
441 if MINC2
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
442 libminc2_la_SOURCES += \
1763
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
443 libsrc2/convert.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
444 libsrc2/datatype.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
445 libsrc2/dimension.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
446 libsrc2/free.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
447 libsrc2/grpattr.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
448 libsrc2/hyper.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
449 libsrc2/label.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
450 libsrc2/m2util.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
451 libsrc2/record.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
452 libsrc2/slice.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
453 libsrc2/valid.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
454 libsrc2/volprops.c \
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
455 libsrc2/volume.c
2189
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
456 else
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
457 EXTRA_DIST += \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
458 libsrc2/convert.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
459 libsrc2/datatype.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
460 libsrc2/dimension.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
461 libsrc2/free.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
462 libsrc2/grpattr.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
463 libsrc2/hyper.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
464 libsrc2/label.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
465 libsrc2/m2util.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
466 libsrc2/record.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
467 libsrc2/slice.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
468 libsrc2/valid.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
469 libsrc2/volprops.c \
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
470 libsrc2/volume.c
b6517dede232 Modify build system to allow selection of MINC 2 (HDF5/NetCDF) or MINC 1 (NetCDF only)
bert <bert>
parents: 2167
diff changeset
471 endif
1504
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
472
2476
be77e1e3845c * CMakeLists.txt: updated version
rotor <rotor>
parents: 2470
diff changeset
473 libvolume_io2_la_LDFLAGS = -version-info 2:2:1
1763
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
474 libvolume_io2_la_SOURCES = \
1504
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
475 volume_io/Geometry/colour.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
476 volume_io/Geometry/colour_def.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
477 volume_io/Geometry/gaussian.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
478 volume_io/Geometry/inverse.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
479 volume_io/Geometry/newton.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
480 volume_io/Geometry/points.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
481 volume_io/Geometry/splines.c \
c460bf395a07 Update build system to use automake and libtool.
stever <stever>
parents:
diff changeset
482 volume_io/Geometry/tensors.c \
c460bf395a07 Update build system to use automake and libtool.
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diff changeset
483 volume_io/Geometry/transforms.c \
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diff changeset
484 volume_io/MNI_formats/gen_xf_io.c \
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485 volume_io/MNI_formats/gen_xfs.c \
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486 volume_io/MNI_formats/grid_transforms.c \
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487 volume_io/MNI_formats/mni_io.c \
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488 volume_io/MNI_formats/tag_points.c \
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489 volume_io/MNI_formats/thin_plate_spline.c \
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490 volume_io/Prog_utils/alloc.c \
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491 volume_io/Prog_utils/alloc_check.c \
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492 volume_io/Prog_utils/arrays.c \
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493 volume_io/Prog_utils/files.c \
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494 volume_io/Prog_utils/print.c \
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495 volume_io/Prog_utils/progress.c \
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496 volume_io/Prog_utils/string.c \
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497 volume_io/Prog_utils/time.c \
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498 volume_io/Volumes/evaluate.c \
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499 volume_io/Volumes/get_hyperslab.c \
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500 volume_io/Volumes/input_free.c \
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501 volume_io/Volumes/input_mnc.c \
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502 volume_io/Volumes/input_volume.c \
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503 volume_io/Volumes/multidim_arrays.c \
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504 volume_io/Volumes/output_mnc.c \
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505 volume_io/Volumes/output_volume.c \
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506 volume_io/Volumes/set_hyperslab.c \
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507 volume_io/Volumes/volume_cache.c \
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508 volume_io/Volumes/volumes.c
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509
2138
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bert <bert>
parents: 2055
diff changeset
510 libacr_nema_la_SOURCES = \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
511 conversion/Acr_nema/acr_io.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
512 conversion/Acr_nema/dicom_client_routines.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
513 conversion/Acr_nema/dicom_network.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
514 conversion/Acr_nema/element.c \
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bert <bert>
parents: 2055
diff changeset
515 conversion/Acr_nema/file_io.c \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
516 conversion/Acr_nema/globals.c \
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bert <bert>
parents: 2055
diff changeset
517 conversion/Acr_nema/group.c \
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bert <bert>
parents: 2055
diff changeset
518 conversion/Acr_nema/message.c \
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bert <bert>
parents: 2055
diff changeset
519 conversion/Acr_nema/value_repr.c
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
520
2502
8bc0b7839310 * added -version flag to minchistory via POD
rotor <rotor>
parents: 2499
diff changeset
521 # MAN pages go here. The "dist_" prefix signals that they
1581
c072a46c687d *** empty log message ***
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522 # are to be included in source distribution.
1504
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523 #
c460bf395a07 Update build system to use automake and libtool.
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524 dist_man1_MANS = \
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14fb7b406b04 Add manpages from Debian package.
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parents: 1504
diff changeset
525 progs/coordinates/voxeltoworld.man1 \
1504
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526 progs/minc_modify_header/minc_modify_header.man1 \
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527 progs/mincaverage/mincaverage.man1 \
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528 progs/minccalc/minccalc.man1 \
2502
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rotor <rotor>
parents: 2499
diff changeset
529 progs/minccomplete/minccomplete.man1 \
1504
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diff changeset
530 progs/mincconcat/mincconcat.man1 \
2499
b29b6ad22382 * ported HDF calls to 1.8.x
rotor <rotor>
parents: 2476
diff changeset
531 progs/minccmp/minccmp.man1 \
1505
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diff changeset
532 progs/minccopy/minccopy.man1 \
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533 progs/mincdiff/mincdiff.man1 \
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diff changeset
534 progs/mincedit/mincedit.man1 \
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535 progs/mincexpand/mincexpand.man1 \
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diff changeset
536 progs/mincextract/mincextract.man1 \
1868
a324c630ebc7 Added mincgen/mincdump
bert <bert>
parents: 1806
diff changeset
537 progs/mincgen/mincgen.man1 \
1504
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diff changeset
538 progs/mincheader/mincheader.man1 \
2158
f857580298ee Add man page for minchistory.
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parents: 2138
diff changeset
539 progs/minchistory/minchistory.man1 \
1504
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parents:
diff changeset
540 progs/mincinfo/mincinfo.man1 \
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diff changeset
541 progs/minclookup/minclookup.man1 \
c460bf395a07 Update build system to use automake and libtool.
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diff changeset
542 progs/mincmakescalar/mincmakescalar.man1 \
c460bf395a07 Update build system to use automake and libtool.
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diff changeset
543 progs/mincmakevector/mincmakevector.man1 \
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diff changeset
544 progs/mincmath/mincmath.man1 \
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545 progs/mincpik/mincpik.man1 \
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546 progs/mincresample/mincresample.man1 \
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547 progs/mincreshape/mincreshape.man1 \
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548 progs/mincstats/mincstats.man1 \
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diff changeset
549 progs/minctoraw/minctoraw.man1 \
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550 progs/mincview/invert_raw_image.man1 \
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diff changeset
551 progs/mincview/mincview.man1 \
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552 progs/mincwindow/mincwindow.man1 \
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553 progs/rawtominc/rawtominc.man1 \
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parents: 1504
diff changeset
554 progs/xfm/transformtags.man1 \
2513
42770fead03b * added xfm2def
rotor <rotor>
parents: 2506
diff changeset
555 progs/xfm/xfm2def.man1 \
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14fb7b406b04 Add manpages from Debian package.
stever <stever>
parents: 1504
diff changeset
556 progs/xfm/xfmconcat.man1 \
1763
70c1605badbc Added new stuff for MINC 2.0
bert <bert>
parents: 1582
diff changeset
557 progs/xfm/xfminvert.man1 \
2386
9820d5a86b02 * changes for Claude for free in volume_io, added xfmflip,
rotor <rotor>
parents: 2382
diff changeset
558 progs/xfm/xfmflip.man1 \
2055
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
559 progs/mincconvert/mincconvert.man1 \
f9fbad7a060f Update Makefile.am to reflect new man pages, headers, and volume_io header organization
bert <bert>
parents: 1947
diff changeset
560 conversion/ecattominc/ecattominc.man1 \
2138
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bert <bert>
parents: 2055
diff changeset
561 conversion/minctoecat/minctoecat.man1 \
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bert <bert>
parents: 2055
diff changeset
562 conversion/nifti1/nii2mnc.man1 \
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bert <bert>
parents: 2055
diff changeset
563 conversion/nifti1/mnc2nii.man1 \
dbfdf9f169d5 Latest build updates
bert <bert>
parents: 2055
diff changeset
564 conversion/micropet/upet2mnc.man1 \
2367
8caaa54d84ec Modified Makefile to build vff2mnc conversion utility
baghdadi <baghdadi>
parents: 2274
diff changeset
565 conversion/dcm2mnc/dcm2mnc.man1 \
8caaa54d84ec Modified Makefile to build vff2mnc conversion utility
baghdadi <baghdadi>
parents: 2274
diff changeset
566 conversion/vff2mnc/vff2mnc.man1
1504
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567
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diff changeset
568 dist_man3_MANS = libsrc/ParseArgv.man3