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Use Octave coding conventions in all m-file %!test blocks
* wavread.m, acosd.m, acot.m, acotd.m, acoth.m, acsc.m, acscd.m, acsch.m,
asec.m, asecd.m, asech.m, asind.m, atand.m, cosd.m, cot.m, cotd.m, coth.m,
csc.m, cscd.m, csch.m, sec.m, secd.m, sech.m, sind.m, tand.m, accumarray.m,
accumdim.m, bitcmp.m, bitget.m, bitset.m, blkdiag.m, cart2pol.m, cart2sph.m,
celldisp.m, chop.m, circshift.m, colon.m, common_size.m, cplxpair.m,
cumtrapz.m, curl.m, dblquad.m, deal.m, divergence.m, flipdim.m, fliplr.m,
flipud.m, genvarname.m, gradient.m, idivide.m, int2str.m, interp1.m,
interp1q.m, interp2.m, interp3.m, interpft.m, interpn.m, isa.m, isdir.m,
isequal.m, isequalwithequalnans.m, issquare.m, logspace.m, nargchk.m,
narginchk.m, nargoutchk.m, nextpow2.m, nthargout.m, num2str.m, pol2cart.m,
polyarea.m, postpad.m, prepad.m, profile.m, profshow.m, quadgk.m, quadv.m,
randi.m, rat.m, repmat.m, rot90.m, rotdim.m, shift.m, shiftdim.m, sph2cart.m,
structfun.m, trapz.m, triplequad.m, convhull.m, dsearch.m, dsearchn.m,
griddata3.m, griddatan.m, rectint.m, tsearchn.m, __makeinfo__.m, doc.m,
get_first_help_sentence.m, help.m, type.m, unimplemented.m, which.m, imread.m,
imwrite.m, dlmwrite.m, fileread.m, is_valid_file_id.m, strread.m, textread.m,
textscan.m, commutation_matrix.m, cond.m, condest.m, cross.m,
duplication_matrix.m, expm.m, housh.m, isdefinite.m, ishermitian.m,
issymmetric.m, logm.m, normest.m, null.m, onenormest.m, orth.m, planerot.m,
qzhess.m, rank.m, rref.m, trace.m, vech.m, ans.m, bincoeff.m, bug_report.m,
bzip2.m, comma.m, compare_versions.m, computer.m, edit.m, fileparts.m,
fullfile.m, getfield.m, gzip.m, info.m, inputname.m, isappdata.m, isdeployed.m,
ismac.m, ispc.m, isunix.m, list_primes.m, ls.m, mexext.m, namelengthmax.m,
news.m, orderfields.m, paren.m, recycle.m, rmappdata.m, semicolon.m,
setappdata.m, setfield.m, substruct.m, symvar.m, ver.m, version.m,
warning_ids.m, xor.m, fminbnd.m, fsolve.m, fzero.m, lsqnonneg.m, optimset.m,
pqpnonneg.m, sqp.m, matlabroot.m, __gnuplot_drawnow__.m,
__plt_get_axis_arg__.m, ancestor.m, cla.m, clf.m, close.m, colorbar.m,
colstyle.m, comet3.m, contourc.m, figure.m, gca.m, gcbf.m, gcbo.m, gcf.m,
ginput.m, graphics_toolkit.m, gtext.m, hggroup.m, hist.m, hold.m, isfigure.m,
ishghandle.m, ishold.m, isocolors.m, isonormals.m, isosurface.m, isprop.m,
legend.m, line.m, loglog.m, loglogerr.m, meshgrid.m, ndgrid.m, newplot.m,
orient.m, patch.m, plot3.m, plotyy.m, __print_parse_opts__.m, quiver3.m,
refreshdata.m, ribbon.m, semilogx.m, semilogxerr.m, semilogy.m, stem.m,
stem3.m, subplot.m, title.m, uigetfile.m, view.m, whitebg.m, compan.m, conv.m,
deconv.m, mkpp.m, mpoles.m, pchip.m, poly.m, polyaffine.m, polyder.m,
polyfit.m, polygcd.m, polyint.m, polyout.m, polyval.m, polyvalm.m, ppder.m,
ppint.m, ppjumps.m, ppval.m, residue.m, roots.m, spline.m, intersect.m,
ismember.m, powerset.m, setdiff.m, setxor.m, union.m, unique.m,
autoreg_matrix.m, bartlett.m, blackman.m, detrend.m, fftconv.m, fftfilt.m,
fftshift.m, freqz.m, hamming.m, hanning.m, ifftshift.m, sinc.m, sinetone.m,
sinewave.m, unwrap.m, bicg.m, bicgstab.m, gmres.m, gplot.m, nonzeros.m, pcg.m,
pcr.m, spaugment.m, spconvert.m, spdiags.m, speye.m, spfun.m, spones.m,
sprand.m, sprandsym.m, spstats.m, spy.m, svds.m, treelayout.m, bessel.m,
beta.m, betaln.m, factor.m, factorial.m, isprime.m, lcm.m, legendre.m,
nchoosek.m, nthroot.m, perms.m, pow2.m, primes.m, reallog.m, realpow.m,
realsqrt.m, hadamard.m, hankel.m, hilb.m, invhilb.m, magic.m, rosser.m,
vander.m, __finish__.m, center.m, cloglog.m, corr.m, cov.m, gls.m, histc.m,
iqr.m, kendall.m, kurtosis.m, logit.m, mahalanobis.m, mean.m, meansq.m,
median.m, mode.m, moment.m, ols.m, ppplot.m, prctile.m, probit.m, quantile.m,
range.m, ranks.m, run_count.m, runlength.m, skewness.m, spearman.m,
statistics.m, std.m, table.m, var.m, zscore.m, betacdf.m, betainv.m, betapdf.m,
betarnd.m, binocdf.m, binoinv.m, binopdf.m, binornd.m, cauchy_cdf.m,
cauchy_inv.m, cauchy_pdf.m, cauchy_rnd.m, chi2cdf.m, chi2inv.m, chi2pdf.m,
chi2rnd.m, discrete_cdf.m, discrete_inv.m, discrete_pdf.m, discrete_rnd.m,
empirical_cdf.m, empirical_inv.m, empirical_pdf.m, empirical_rnd.m, expcdf.m,
expinv.m, exppdf.m, exprnd.m, fcdf.m, finv.m, fpdf.m, frnd.m, gamcdf.m,
gaminv.m, gampdf.m, gamrnd.m, geocdf.m, geoinv.m, geopdf.m, geornd.m,
hygecdf.m, hygeinv.m, hygepdf.m, hygernd.m, kolmogorov_smirnov_cdf.m,
laplace_cdf.m, laplace_inv.m, laplace_pdf.m, laplace_rnd.m, logistic_cdf.m,
logistic_inv.m, logistic_pdf.m, logistic_rnd.m, logncdf.m, logninv.m,
lognpdf.m, lognrnd.m, nbincdf.m, nbininv.m, nbinpdf.m, nbinrnd.m, normcdf.m,
norminv.m, normpdf.m, normrnd.m, poisscdf.m, poissinv.m, poisspdf.m,
poissrnd.m, stdnormal_cdf.m, stdnormal_inv.m, stdnormal_pdf.m, stdnormal_rnd.m,
tcdf.m, tinv.m, tpdf.m, trnd.m, unidcdf.m, unidinv.m, unidpdf.m, unidrnd.m,
unifcdf.m, unifinv.m, unifpdf.m, unifrnd.m, wblcdf.m, wblinv.m, wblpdf.m,
wblrnd.m, kolmogorov_smirnov_test.m, kruskal_wallis_test.m, base2dec.m,
bin2dec.m, blanks.m, cstrcat.m, deblank.m, dec2base.m, dec2bin.m, dec2hex.m,
findstr.m, hex2dec.m, index.m, isletter.m, mat2str.m, rindex.m, str2num.m,
strcat.m, strjust.m, strmatch.m, strsplit.m, strtok.m, strtrim.m, strtrunc.m,
substr.m, validatestring.m, demo.m, example.m, fail.m, speed.m, addtodate.m,
asctime.m, clock.m, ctime.m, date.m, datenum.m, datetick.m, datevec.m,
eomday.m, etime.m, is_leap_year.m, now.m:
Use Octave coding conventions in all m-file %!test blocks
author | Rik <octave@nomad.inbox5.com> |
---|---|
date | Mon, 13 Feb 2012 07:29:44 -0800 |
parents | 7277fe922e99 |
children | 3edba8b5f430 |
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## Copyright (C) 2006 Sylvain Pelissier <sylvain.pelissier@gmail.com> ## Copyright (C) 2012 Carlo de Falco ## ## This program is free software; you can redistribute it and/or modify ## it under the terms of the GNU General Public License as published by ## the Free Software Foundation; either version 2 of the License, or ## (at your option) any later version. ## ## This program is distributed in the hope that it will be useful, ## but WITHOUT ANY WARRANTY; without even the implied warranty of ## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ## GNU General Public License for more details. ## ## You should have received a copy of the GNU General Public License ## along with this program; If not, see <http://www.gnu.org/licenses/>. ## -*- texinfo -*- ## ## @deftypefn {Function File} {@var{x} =} bicg (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{M1}, @var{M2}, @var{x0}) ## @deftypefnx {Function File} {@var{x} =} bicg (@var{A}, @var{b}, @var{rtol}, @var{maxit}, @var{P}) ## @deftypefnx {Function File} {[@var{x}, @var{flag}, @var{relres}, @var{iter}, @var{resvec}] =} bicg (@var{A}, @var{b}, @dots{}) ## Solve @code{A x = b} using the Bi-conjugate gradient iterative method. ## ## @itemize @minus ## @item @var{rtol} is the relative tolerance, if not given ## or set to [] the default value 1e-6 is used. ## ## @item @var{maxit} the maximum number of outer iterations, ## if not given or set to [] the default value ## @code{min (20, numel (b))} is used. ## ## @item @var{x0} the initial guess, if not given or set to [] ## the default value @code{zeros (size (b))} is used. ## @end itemize ## ## @var{A} can be passed as a matrix or as a function handle or ## inline function @code{f} such that @code{f(x, "notransp") = A*x} ## and @code{f(x, "transp") = A'*x}. ## ## The preconditioner @var{P} is given as @code{P = M1 * M2}. ## Both @var{M1} and @var{M2} can be passed as a matrix or as ## a function handle or inline function @code{g} such that ## @code{g(x, "notransp") = M1 \ x} or @code{g(x, "notransp") = M2 \ x} and ## @code{g(x, "transp") = M1' \ x} or @code{g(x, "transp") = M2' \ x}. ## ## If called with more than one output parameter ## ## @itemize @minus ## @item @var{flag} indicates the exit status: ## @itemize @minus ## @item 0: iteration converged to the within the chosen tolerance ## ## @item 1: the maximum number of iterations was reached before convergence ## ## @item 3: the algorithm reached stagnation ## @end itemize ## (the value 2 is unused but skipped for compatibility). ## ## @item @var{relres} is the final value of the relative residual. ## ## @item @var{iter} is the number of iterations performed. ## ## @item @var{resvec} is a vector containing the relative residual at each iteration. ## @end itemize ## ## @seealso{bicgstab, cgs, gmres, pcg} ## ## @end deftypefn function [x, flag, res1, k, resvec] = bicg (A, b, tol, maxit, M1, M2, x0) if (nargin >= 2 && isvector (full (b))) if (ischar (A)) fun = str2func (A); Ax = @(x) feval (fun, x, "notransp"); Atx = @(x) feval (fun, x, "transp"); elseif (ismatrix (A)) Ax = @(x) A * x; Atx = @(x) A' * x; elseif (isa (A, "function_handle")) Ax = @(x) feval (A, x, "notransp"); Atx = @(x) feval (A, x, "transp"); else error (["bicg: first argument is expected to " ... "be a function or a square matrix"]); endif if (nargin < 3 || isempty (tol)) tol = 1e-6; endif if (nargin < 4 || isempty (maxit)) maxit = min (rows (b), 20); endif if (nargin < 5 || isempty (M1)) M1m1x = @(x, ignore) x; M1tm1x = M1m1x; elseif (ischar (M1)) fun = str2func (M1); M1m1x = @(x) feval (fun, x, "notransp"); M1tm1x = @(x) feval (fun, x, "transp"); elseif (ismatrix (M1)) M1m1x = @(x) M1 \ x; M1tm1x = @(x) M1' \ x; elseif (isa (M1, "function_handle")) M1m1x = @(x) feval (M1, x, "notransp"); M1tm1x = @(x) feval (M1, x, "transp"); else error (["bicg: preconditioner is expected to " ... "be a function or matrix"]); endif if (nargin < 6 || isempty (M2)) M2m1x = @(x, ignore) x; M2tm1x = M2m1x; elseif (ischar (M2)) fun = str2func (M2); M2m1x = @(x) feval (fun, x, "notransp"); M2tm1x = @(x) feval (fun, x, "transp"); elseif (ismatrix (M2)) M2m1x = @(x) M2 \ x; M2tm1x = @(x) M2' \ x; elseif (isa (M2, "function_handle")) M2m1x = @(x) feval (M2, x, "notransp"); M2tm1x = @(x) feval (M2, x, "transp"); else error (["bicg: preconditioner is expected to " ... "be a function or matrix"]); endif Pm1x = @(x) M2m1x (M1m1x (x)); Ptm1x = @(x) M1tm1x (M2tm1x (x)); if (nargin < 7 || isempty (x0)) x0 = zeros (size (b)); endif y = x = x0; c = b; r0 = b - Ax (x); s0 = c - Atx (y); d = Pm1x (r0); f = Ptm1x (s0); bnorm = norm (b); res0 = Inf; if (any (r0 != 0)) for k = 1:maxit a = (s0' * Pm1x (r0)) ./ (f' * Ax (d)); x += a * d; y += conj (a) * f; r1 = r0 - a * Ax (d); s1 = s0 - conj (a) * Atx (f); beta = (s1' * Pm1x (r1)) ./ (s0' * Pm1x (r0)); d = Pm1x (r1) + beta * d; f = Ptm1x (s1) + conj (beta) * f; r0 = r1; s0 = s1; res1 = norm (b - Ax (x)) / bnorm; if (res1 < tol) flag = 0; if (nargout < 2) printf ("bicg converged at iteration %i ", k); printf ("to a solution with relative residual %e\n", res1); endif break; endif if (res0 <= res1) flag = 3; printf ("bicg stopped at iteration %i ", k); printf ("without converging to the desired tolerance %e\n", tol); printf ("because the method stagnated.\n"); printf ("The iterate returned (number %i) ", k-1); printf ("has relative residual %e\n", res0); break endif res0 = res1; if (nargout > 4) resvec(k) = res0; endif endfor if (k == maxit) flag = 1; printf ("bicg stopped at iteration %i ", maxit); printf ("without converging to the desired tolerance %e\n", tol); printf ("because the maximum number of iterations was reached. "); printf ("The iterate returned (number %i) has ", maxit); printf ("relative residual %e\n", res1); endif else flag = 0; if (nargout < 2) printf ("bicg converged after 0 interations\n"); endif endif else print_usage (); endif endfunction; %!test %! n = 100; %! A = spdiags ([-2*ones(n,1) 4*ones(n,1) -ones(n,1)], -1:1, n, n); %! b = sum (A, 2); %! tol = 1e-8; %! maxit = 15; %! M1 = spdiags ([ones(n,1)/(-2) ones(n,1)],-1:0, n, n); %! M2 = spdiags ([4*ones(n,1) -ones(n,1)], 0:1, n, n); %! [x, flag, relres, iter, resvec] = bicg (A, b, tol, maxit, M1, M2); %! assert (x, ones (size (b)), 1e-7); %!function y = afun (x, t, a) %! switch t %! case "notransp" %! y = a * x; %! case "transp" %! y = a' * x; %! endswitch %!endfunction %! %!test %! n = 100; %! A = spdiags ([-2*ones(n,1) 4*ones(n,1) -ones(n,1)], -1:1, n, n); %! b = sum (A, 2); %! tol = 1e-8; %! maxit = 15; %! M1 = spdiags ([ones(n,1)/(-2) ones(n,1)],-1:0, n, n); %! M2 = spdiags ([4*ones(n,1) -ones(n,1)], 0:1, n, n); %! %! [x, flag, relres, iter, resvec] = bicg (@(x, t) afun (x, t, A), %! b, tol, maxit, M1, M2); %! assert (x, ones (size (b)), 1e-7); %!test %! n = 100; %! tol = 1e-8; %! a = sprand (n, n, .1); %! A = a' * a + 100 * eye (n); %! b = sum (A, 2); %! [x, flag, relres, iter, resvec] = bicg (A, b, tol, [], diag (diag (A))); %! assert (x, ones (size (b)), 1e-7);