2008-08-13  Andrew L Janke <a.janke@gmail.com>
	* progs/rawtominc/rawtominc.c: changed to an enum for modalities
	   to get around an esoteric bug with use of ParseArgv and strings
	   passed by reference on 64 bit architectures

2008-08-11  Andrew L Janke <a.janke@gmail.com>
	* conversion/Acr_Nema: Many changes from Claude
	* conversion/dcm2mnc: Many changes for 64 bit and "new" DICOM types

2008-04-07  Andrew L Janke <a.janke@gmail.com>
	* conversion/ecattominc/ecattominc.c: added config.h
	* Makefile.am: removed minc_globdef.h
	* libsrc/minc_basic.h: rewrote error code to avoid global vars (Claude)
	* libsrc/minc_error.h: changes for error code (Claude)
	* libsrc/minc_error.c: changes for error code (Claude)

2008-03-08  Andrew L Janke <a.janke@gmail.com>
	* progs/mincpik/mincpik: fixed a bug with bar width from Mike Ferreira

2008-03-07  Andrew L Janke <a.janke@gmail.com>
	* progs/mincpik/mincpik: fixed two bugs with lookup triplanars

2008-02-28  Andrew L Janke <a.janke@gmail.com>
	* progs/mincpik/mincpik: added the -anot_bar option

2008-02-15  Andrew L Janke <a.janke@gmail.com>
	* Removed all fortran code (the subdirectory anyhow)
	* removed get_image_offset.c as it will not work with MINC2
	* updated configure.in and Makefile.am to suit
	* changed --enable-minc2 to --disable-minc2

2008-01-24  Andrew L Janke <a.janke@gmail.com>
	* AUTHORS: added Claude Lepage
	* progs/xfm/xfmconcat.c: Added a history patch from Mishkin Derakhshan
	* conversion/nifti1/nii2mnc.c: Added a patch from Claude for patient names

2008-01-17   Andrew L Janke <a.janke@gmail.com>
	* libsrc/hdf_convenience.c (hdf_path_from_name): added NC_NAT to switch

2008-01-17  Steve M. Robbins  <smr@sumost.ca>

	* testdir/test_speed.c (nctypename): Return "unknown" if no switch
	case used.

	* libsrc2/test/vector_dimension-test.c (create_test_file): 
	* libsrc2/test/hyper-test-2.c (create_test_file): 
	* conversion/dcm2mnc/dicom_to_minc.c (copy_element_properties):
	Change return type from int to void; no callers require a return value.

	* testdir/icv_fillvalue.c (main):
	* conversion/micropet/upet2mnc.c (main): Return 0 at end of function.

MINC 2:
2008-01-17  Andrew L Janke <a.janke@gmail.com>
	* removed add rcsid's as they are not used
	* removed a bunch of ^L's that crept in somehow
	* removed old and out of date BUGS file

2008-01-13  Steve M. Robbins  <smr@sumost.ca>
	* progs/mincreshape/mincreshape.h: 
	* progs/mincreshape/mincreshape.c: 
	* progs/mincreshape/copy_data.c: Move static function declarations
	from header file to .c files that define the function.  Avoids
	compiler warnings.

	* progs/mincresample/mincresample.h: 
	* progs/mincresample/mincresample.c: 
	* progs/mincresample/resample_volumes.c: Move static function
	declarations from header file to .c files that define the
	function.  Avoids compiler warnings.

	* progs/minccalc/minccalc.c (constant,constant2): Remove unushed
	variables.

	* libsrc/voxel_loop.c (get_output_filename): Remove unused function.

	* conversion/nifti1/nifti1_local.h:
	* conversion/nifti1/mnc2nii.c: Move definition of dimnames to .c
	file where it is used.  Avoids compiler warning.

	* conversion/dcm2mnc/dicom_read.c: Don't declare or define
	convert_numa3_coordinate(), since the caller is #if 0'd out.

2008-01-12  Steve M. Robbins  <smr@sumost.ca>
	* libsrc2/hyper.c (mirw_hyperslab_raw): 
	* libsrc/hdf_convenience.c (hdf_varget): Use hsize_t rather than
	hssize_t for 3rd argument to H5Sselect_hyperslab().

	* libsrc/voxel_loop.c:
	* progs/mincinfo/mincinfo.c:
	* progs/mincmath/mincmath.c:
	* progs/rawtominc/rawtominc.c:
	* testdir/icv.c:
	* testdir/icv_dim.c:
	* testdir/icv_dim1.c:
	* testdir/icv_fillvalue.c:
	* testdir/icv_range.c:
	* testdir/minc_types.c: Add braces around static initializers.

2008-01-11  Andrew L Janke <a.janke@gmail.com>
	* removed outdated TODO file
	* merged WHATSNEW-2.0 into NEWS/README

2008-01-09  Andrew L Janke <a.janke@gmail.com>
	* replaced mincedit with a complete rewrite in sh

2008-01-04  Andrew L Janke <a.janke@gmail.com>
	* mincheader: updated scripting style and replaced tmpdir code

2008-01-02  Steve M. Robbins  <smr@sumost.ca>
	* testdir/run_tests.sh: 
	* testdir/run_test2.sh: Quote the value assigned to variable tests,
	so that the scripts run.

2007-12-18 Jonathan Harlap <jharlap@bic.mni.mcgill.ca>
	* dcm2mnc: Restored dicom fields in minc headers. 
                (conversion/dcm2mnc/minc_file.c)
	* dcm2mnc: Restored old name of acquisition comments 
                attribute. (conversion/dcm2mnc/minc_file.c)

2007-12-06 Claude Lepage <claude@bic.mni.mcgill.ca>
	* Freed more memory in miicv_free (libsrc/image_conversion.c)
	* Added cubic interpolation in mincresample for x-y slices
	* Fixed seg fault bug with null history string (libsrc/minc_convenience.c)
	* Changed hard-coded strings for MIxspace (y,z) (libsrc2/volume.c and
          libsrc2/dimension.c)
	* Made global variables static in minccompress to avoid conflict with libz

2007-12-03 Andrew L Janke <a.janke@gmail.com>
	* changed all global variables to static in progs directory to 
	   avoid possible linker errors in the future. 

2007-10-23  Andrew L Janke <a.janke@gmail.com>
	* Added most things needed for a CMake build
	* nii2mnc mnc2nii: Fixed a linking bug 
	
2007-09-13  Andrew L Janke <a.janke@gmail.com>
	* Added a few more free's for memory thanks to Claude

2007-08-24  Andrew L Janke <a.janke@gmail.com>
	* added xfmflip and man page
	* fixed a bug in the build of minccalc
	* updated nifti library for nii2mnc

2007-08-08 Claude Lepage <claude@bic.mni.mcgill.ca>
	* Increased size of MI_MAX_VAR_BUFFER_SIZE and fix chunking
	for internal file compression using hdf5
	* Modified mincconvert to use default chunking

2007-05-18  Andrew L Janke <a.janke@gmail.com>
	* Fixed up small problems with build process
	* replaced csh scripts with sh. (checks fail if no tcsh)
	* added libsrc2 to the INCLUDES. why this was not in before beats me

2006-09-01  Jonathan Harlap <jharlap@bic.mni.mcgill.ca>
	* conversion/Acr_nema - Fixed a bug causing dump_acr_nema to skip
	all elements with element number 0x0010

2006-05-31 Jonathan Harlap <jharlap@bic.mni.mcgill.ca>
	* Makefile.am - modified to build and install
	image_filters/extract and image_filters/byte_swap if the ACR NEMA
	tools are intstalled, as they are required by dicom_to_minc.pl
	
2006-05-18 Bert Vincent <bert@bic.mni.mcgill.ca>
	* progs/various... added config.h to source files that need it for
	proper operation with MINC 2.0
	
2006-04-19 Claude Lepage <claude@bic.mni.mcgill.ca>
	* fix duplicate instances of solve_linear_system and 
	   scaled_maximal_pivoting_gaussian_elimination in
	   volume_io/Geometry/gaussian.c and libsrc.2. Make static.
	   This is to avoid linker problems with minc2.

2006-04-09 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/dcm2mnc, conversion/Acr_nema - added general support
	for Siemens DTI sequences, inserting attributes according to
	Jennifer Campbell's conventions.
	
2006-03-27 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/nifti1/mnc2nii.c - Set time and vector dimensions 
	"properly" for some versions of Analyze and NIfTI libraries. Also
	set the intent_code field to NIFTI_INTENT_VECTOR if the 
	vector_dimension is set. Also fixed an issue with file names.
	
2006-03-10 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/Acr_nema/element.c - Modify acr_dump_element_list()
	to use helper function maybe_print_as_string() to print data with
	unknown VR as either ASCII or a string of hex bytes.
	
2006-02-28 Bert Vincent <bert@bic.mni.mcgill.ca>
	* libsrc/hdf_convenience.c - Modify the hdf_vardef() function
	to avoid errors in HDF5 1.6.5
	
2006-02-19  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* testdir/create_grid_xfm.c (main): Initialize variable
        mio before using.

2006-02-09 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/dcm2mnc/dicom_to_minc.c, 
	conversion/dcm2mnc/siemens_to_dicom.c - Deal more correctly
	with some odd cases in .IMA files.
	
2006-02-08 Bert Vincent <bert@bic.mni.mcgill.ca>
	* progs/rawtominc/rawtominc.c, conversion/nifti1/nii2mnc.c, 
	  conversion/micropet/upet2mnc.c: Change fopen() parameter
	  to "rb" to force correct operation on DOS/Windows.
	* libsrc2/volume.c: Allow signed as well as unsigned base
	  types for labels.
	
2005-12-15 Bert Vincent <bert@bic.mni.mcgill.ca>
	* libsrc2/volume.c - set units field unconditionally in 
	_miget_file_dimension()
	
2005-12-13 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/dcm2mnc/dicom_to_minc.c: Ignore DICOM protocol
	errors. This change was necessitated by images from a Philips
	Intera scanner version 'NT 10.4.1\\PIIM V2.1.4.1 MIMIT MCS' that
	appears to set the DICOM length field incorrectly.

2005-12-03 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/micropet/upet2mnc.c - fix handling of single-frame data
	* progs/mincgen/main.c - make "-o" option imply "-b"
	
2005-11-22 Bert Vincent <bert@bic.mni.mcgill.ca>
	* progs/mincgen/genlib.c - fix free() issue
	* progs/mincgen/load.c - #include config.h
	
2005-11-11 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/dcm2mnc/dcm2mnc.h - fix definition of IMA_MAGIC_SIZE
	* conversion/dcm2mnc/dcm2mnc.c - fix test for is_ima_file()
	
2005-11-04 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/dcm2mnc/dicom_to_minc.h - further relaxation of 
	COORDINATE_EPSILON, now set to 0.005
	* conversion/dcm2mnc/minc_file.c - combine cloned
	regular/irregular dimension checking code into new function,
	check_regular()
	* conversion/dcm2mnc/dcm2mnc.c - update version to 2.0.07
	
2005-10-26 Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/dcm2mnc/dicom_to_minc.h - set COORDINATE_EPSILON to
	a fixed value of 0.0001 rather than 100*FLT_EPSILON to allow for
	more slop in coordinates.
	* conversion/nifti1/mnc2nii.c - handle missing value for spacetype.
	
2005-09-16 Bert Vincent <bert@bic.mni.mcgill.ca>
	* libsrc2/conversion/dcm2mnc/dicom_read.c - again change the
	handling of the slice thickness / slice spacing issue to
	accomodate Andrew Janke's Philips data. If both slice thickness
	and slice spacing are set, we select the maximum. For some reason
	I had been choosing the minimum, but logically the opposite seems
	more reasonable (and is certainly correct in Andrew's case).
	
2005-09-14 Bert Vincent <bert@bic.mni.mcgill.ca>
	* libsrc2/slice.c - in function mirw_slice_minmax(), properly 
	reorient access for slice minimum and maximum if dimension 
	order has been altered.
	* libsrc2/hyper.c - normalize data correctly in 
	miget_real_value_hyperslab().
	* progs/mincinfo/mincinfo.c - include config.h
	
2005-08-26 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Implemented --enable-hdf5 option in ./configure
	script so that we can selectively enable or disable MINC2 support.
	This required changing the way we treat the MINC2 symbol, and
	being careful to include config.h in all files that call netCDF 
	functions.
	* libsrc2/grpattr.c - Fixed issue in micreate_group() function -
	it would not function properly when a group already existed in the 
	file.
	* conversion/dcm2mnc - Ported changes from MINC 1 branch.
	
2005-07-29  Bert Vincent <bert@bic.mni.mcgill.ca>
	* progs/mincstats/mincstats.c: Add warning when mask file
	specified with no mask range option.
	
2005-07-28  Bert Vincent <bert@bic.mni.mcgill.ca>
	* conversion/nifti1/mnc2nii.c: Implement fix suggested by
	Hyun-Pil Kim to set unused dimension lengths to 1 rather than
	zero.
	
2005-07-25  Bert Vincent <bert@bic.mni.mcgill.ca>
	* progs/mincstats/mincstats.c: Fix calculation of percent
	threshold to correctly account for non-zero histogram floor.
	
2005-07-15 Andrew Janke <a.janke@gmail.com>

	* added -auto_range option to mincpik (thanks to Jon Harlap)

2005-07-15 Bert Vincent <bert@bic.mni.mcgill.ca>
	
	* libsrc/hdf_convenience.c: Two minor fixes.  First, when
	emulating 'signtype' attributes in MINC 2 files, comparisons
	with MI_SIGNED and MI_UNSIGNED should NOT depend on a properly-
	null-terminated  attribute value.  Second, suppress HDF5 errors 
	in hdf_attdel()
	
	* progs/mincresample/mincresample.c
	* progs/mincresample/mincresample.h
	* progs/mincresample/mincresample.man1
	* progs/mincresample/resample_volumes.c
	Support windowed sinc interpolation, as ported from 1.X branch.
	
	* progs/mincconcat/mincconcat.c:
	* progs/mincconcat/mincconcat.man1:
	Add support for -filestarts option, as ported from 1.X branch.
	
2005-07-04  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* Makefile.am:
	* progs/minchistory/minchistory.man1: New manual page for
	minchistory.

2005-07-03  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* configure.in: Check for sysconf().

	* volume_io/Prog_utils/time.c (get_clock_ticks_per_second): Use
	POSIX sysconf() function, if available.

2005-06-22  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Minor fix to ncgenyy.l to avoid compiler complaint on ia64.
	
2005-05-20  Bert Vincent <bert@bic.mni.mcgill.ca>
	
	* Update Makefile.msvc-win32 to build converters.
	
	* Declare restructure_array() in hyper.c to be MNCAPI so that
	nii2mnc can link to it.
	
	* Get rid of warnings in mincgen build.  Affected files are 
	progs/mincgen/ncgenyy.l and progs/mincgen/ncgentab.y
	
	* Replace direct usage of H5Fis_hdf5() function to avoid annoying
	error messages for nonexistant files.  Instead there is now a 
	function named hdf_access() that returns a boolean value TRUE if
	the file can be accessed and is in HDF5 format.  This change
	affected the files libsrc/hdf_convenience.h,
	libsrc/hdf_convenience.c, and libsrc/netcdf_convenience.c

	* Remove and/or conditionalize some test code for memory-mapped
	files that should not have been checked in.  Affected files are
	libsrc/netcdf_convenience.c, libsrc/hdf_convenience.c, and 
	progs/mincstats/mincstats.c
	
2005-05-19  Bert Vincent <bert@bic.mni.mcgill.ca>
	
	* Fix volume.c and m2util.c to be compatible with HDF5 1.6.3 and
	later.
	* Port nifti converter changes from MINC 1.X branch
	* Port dcm2mnc converter changes from MINC 1.X branch
	* Port build changes for dcm2mnc and ACR/NEMA library from MINC
	1.X branch
	
2005-04-18  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Move volume_io headers into Include/volume_io subdirectory.
	
2005-03-17  Andrew Janke  <a.janke@gmail.com>
	* removed ':' from temporary filenames for windows compatibility

2005-03-11 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Improve nii2mnc's support for functional (time-varying) data, and
	support qform as well as sform transforms in the header.
	
2005-01-28 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Incorporate NIfTI-1 converters, nii2mnc and mnc2nii
	* Incorporate upet2mnc, converter for Concorde microPET data.
	* Copied fix for mincmakescalar to warn user if the
	vector_dimension is not the last dimension in the file.
	* Modify Leila's vector_dimension-test code to create its own
	data file, to avoid having to carry around a multi-megabyte test
	file as part of the distrbution.
	
2005-01-19 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Incorporate Anthonin Reilhac's changes to ecattominc
	* Add ecattominc, mnc2nii, and nii2mnc to the automake files
	* Modify mincdump to print long attributes of type NC_BYTE as
	  strings if all of the characters are printable.
	
2005-01-04 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Adapt minc_simple.c to use Leila's revision of the 
	restructure_array() parameters.  This seems to work properly again.
	
2004-12-14 Bert Vincent <bert@bic.mni.mcgill.ca>
     * Got rid of lots of C99-related warnings
     * Added new biModalT algorithms to mincstats

2004-12-15 Andrew Janke <a.janke@gmail.com>
    * added epm-header.in, removed mni_minc.epm.header

2004-12-07 Andrew Janke <a.janke@gmail.com>
    * Squashed yet another bug with the BiModalT code
	    aaargh!  This should now replicate volume_stats even closer!

2004-10-18 Andrew Janke <a.janke@gmail.com>
	* Fixed bug in mincstats -BimodalT code to
           exactly replicate (within reason) volume_stats
	* Changed default # of int histogram bins from 10000 to 65536

2004-08-11 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Fix minc.h for netCDF 3.5.1
	
2004-08-03 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Added new test cases to dimension-test.c
	* Fix bug(s) in volume.c
	* Correctly implement some of the conversion functions
	
2004-06-21 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Updated mincgen man page
	* "Improve" Doxygen documentation 
	
2004-06-16 Bert Vincent <bert@bic.mni.mcgill.ca>	
	* Fixes and improvements for mincgen/mincdump
	* Emulate a vector_dimension for MINC 2.0 files with a compound
	datatype.
	* Move libsrc2 (MINC 2.0 API) files under the MINC hierarchy in CVS
	* Fix ordering of world coordinate values in miconvert_world_to_voxel
	and miconvert_voxel_to_world
	
2004-06-11 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Fix issue with minc_modify_header's new -sappend and -dappend
	options.
	* Add "mincgen" based upon "ncgen" for "mincedit"
	* Fix nasty minccalc bug.  Minccalc would fail to work properly 
	on any file with a vector_dimension of length greater than 1.
	
2004-06-09 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Add netcdf and HDF5 versions to the -version list.
	
2004-06-08 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Avoid printing HDF5 errors on excessively long attributes.  Still
	have to decide how best to deal with this situations - truncate, 
	drop, or somehow convert the attribute into a dataset?  Right now
	we will drop excessively large attributes from HDF5 files, which is
	probably bad.
	* Fix bug (mentioned in previous entries) which caused mincdump
	(as derived from ncdump) to print zero-length attributes as an 
	erroneous string of length one instead of as an empty string.
	* Eliminate bogus "not implemented yet" message from volume_io
	
2004-06-07 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Fix setting of length in hdf_vardef/hdf_dimdef
	* Handle zero-length character strings properly.  There is actually
	a minor bug in "ncdump" which makes zero-length strings appear to
	have length one (the bogus character will appear to match the first 
	character in the preceding string).
	
2004-06-04 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Changed volume_io/Volumes/volume_cache.c to increase both the
	cache size and the default cached volume size (i.e. the size which
	turns on caching).
	
2004-06-01 Bert Vincent <bert@bic.mni.mcgill.ca>
	* Fixed endian-ness issues in MINC 2.0 format.
	
2004-05-25  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Added -dappend, -sappend to minc_modify_header
	
2004-05-20  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Revised man pages
	* Added -2 option to minclookup
	
2004-04-30  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Further reduce compiler issues for IRIX MIPSpro compiler.
	* Tagged version 2.0.06
	
2004-04-29  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Fix compiler compatibility problem against IRIX MIPSpro compiler
	in netcdf_convenience.c
	
2004-04-22  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Expanded test cases
	
2004-04-15  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Add -DMINC2, #ifdef MINC2 to make most MINC2
	additions and changes optional.
	* Expand minc2_uguide.tex
	
2004-04-08  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Add mincdump command
	* Minor changes to increase portability, esp. to Windows.

2004-03-25  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Add support for -compress and -chunk options to mincconvert
	* Some small library fixes
	* Fix handling of irregular dimension variables in emulation
	library.
	
2004-02-27  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Fix dimorder handling

2004-02-18  Bert Vincent <bert@bic.mni.mcgill.ca> 
	
	* Fixed handling of "rootvariable" emulation in hdf_convenience.c
	and netcdf_convenience.c
	
	* Fixed behavior of some of the netCDF emulation attribute functions
	in hdf_convenience.c and minc_compat.c
	
2004-02-17  Bert Vincent <bert@bic.mni.mcgill.ca>
	
	* Fixed mincconvert - added ncendef()
	
	* Actually implemented MINC_COMPRESS

MINC 1:

2004-03-24  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Minor fix to miappend_history() in libsrc/minc_convenience.c
	
2004-03-23  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Modify configure.in, libsrc/netcdf_convenience.c, 
	volume_io/Prog_utils/files.c, and volume_io/Prog_utils/time.c to 
	make MINC more portable, especially to Windows compilers.
	
2003-02-02  Bert Vincent <bert@bic.mni.mcgill.ca>
	* Added -version flag for all executables (or at least all "C" 
	language executables).  Implemented in ParseArgv() to make it
	universal, and applications can override their version number by
	adding a "ARGV_VERINFO" record to their argTable[].

	* Created miget_version() and miappend_history() functions.
	
2003-12-05  Andrew L. Janke <a.janke@gmail.com>

    * Changes to mincpik: added -depth option (as per a diff supplied
    by Jonathan HARLAP); while at it, did a bit of clean-up including
    replacing home-grown tempdir cleanup with File::Temp; Added -clobber
    option so that mincpik more closely matches the other minc tools.

2003-11-23  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* configure.in: Set version to 1.3.  Check for headers sys/stat.h,
	sys/wait.h, unistd.h; and for functions fork, system, and popen.

	* libsrc/netcdf_convenience.c: Use above checks for conditional 
	inclusion of headers.
	(execute_decompress_command): Use fork or system to decompress
	file, if facility available.

2003-11-21  Steve ROBBINS  <stever@bic.mni.mcgill.ca>

	* volume_io/Include/basic.h: Include <math.h> for M_PI definition.
	Build problem reported by Maxime Descoteaux
	<mdesco@cim.mcgill.ca>.

2003-11-14  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* Makefile.am (libvolume_io_la_LDFLAGS): 
	(libminc_la_LDFLAGS): Update version-info.

	* progs/rawtominc/rawtominc.c: Include <unistd.h> for declaration
	of swab().  Cast void pointer "image" to unsigned char before
	adding integer size; otherwise IRIX CC fails.

	* progs/mincview/invert_raw_image.c (main): 
	* progs/minc_modify_header/minc_modify_header.c (main): Specify
	return type.

	* libsrc/voxel_loop.c: 
	* libsrc/value_conversion.c: 
	* libsrc/dim_conversion.c: Include <math.h> for declaration of fabs().

2003-11-13  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* progs/minchistory:
	* progs/mincpik: New.  Perl scripts moved here from Andrew Janke's
	"minc_dev" tool set.
	
	* Makefile.am (dist_bin_SCRIPTS): Install minchistory and mincpik.

	* README: Mention minchistory, mincpik.  Correct distribution
	URL.

	* mni_minc.epm.header: Update license, version.

	* Makefile.am (EXTRA_DIST): Distribute README.binary_packaging.

	* configure.in: Run autoupdate; change AM_CONFIG_HEADER to
	AC_CONFIG_HEADERS.

	* testdir/Makefile.am (INCLUDES): Add volume_io/Include.

2003-10-31  Bert Vincent <bert@bic.mni.mcgill.ca>

	* progs/rawtominc/rawtominc.c: Add options -dimorder and -swap_bytes.

2003-06-01  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* testdir/Makefile.am (script_tests): 

	* Makefile.am (SUBDIRS): Process volume_io before testdir,
	because tests may link against volume_io.

	* volume_io/MNI_formats/gen_xf_io.c (output_one_transform): 
	Update *volume_count after writing a grid transform (thanks, Peter
	Neelin).

	* testdir/create_grid_xfm.c: New.  Utility to create grid
	transformation.

	* testdir/test_xfm.c: Copied from volume_io/Testing/test-xfm.c.

	* testdir/xfmconcat_01.sh:
	* testdir/xfmconcat_02.sh: New.  Test concatenation of grid
	transformations.

2003-03-17  Bert Vincent      <bert@bic.mni.mcgill.ca>

	* configure.in: added check for mkstemp(), tempnam(), and tmpnam()
	* libsrc/netcdf_convenience.c: added definition of micreate_tempfile()
	* libsrc/minc.h: added declaration of micreate_tempfile()
	* volume_io/Prog_utils/files.c: replaced uses of tmpnam() with
	  micreate_tempfile().
	* volume_io/Volumes/volume_cache.c: replaced use of tmpnam() with
	  micreate_tempfile()
	
2003-02-14  Jason Lerch	      <jason@bic.mni.mcgill.ca>

	* configure.in: Set version to 1.1.1
	* mni_minc.epm.header: added.
	* README.binary_packaging: added.

2003-01-17  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* configure.in: Set version to 1.2.
	
2003-01-17  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* MINC-1-1 tagged.
	
	* README.release:
	* INSTALL.minc: new.

	* AUTHORS:
	* GETTING_STARTED:
	* INSTALL:
	* README: Tune up for release.

2003-01-10  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* testdir/Makefile.am (INCLUDES): 
	* volume_io/Testing/Makefile.am (INCLUDES): Set includes for
	test files.

	* Makefile.am (EXTRA_DIST, dist-hook): Distribute fortran
	subdirectory, sans the CVS files.

	* progs/mincstats/mincstats.man1: Document change of
	-max_bins to -int_max_bins.

2003-01-09  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* progs/rawtominc/rawtominc.man1: Document -skip option.

	* volume_io/Makefile.am: New.

	* volume_io/Documentation/Makefile.am: New.
	
	* volume_io/Testing/check_xfm.sh: 
	* volume_io/Testing/test-xfm.c:
	* volume_io/Testing/t1.xfm:
	* volume_io/Testing/t2.xfm:
	* volume_io/Testing/t3.xfm:
	* volume_io/Testing/t3_grid_0.mnc:
	* volume_io/Testing/Makefile.am: New.

	* volume_io/Testing/test-xfm.c: Allow tolerance specified on
	command line.  Exit with nonzero status if point out of tolerance.

	* Makefile.am (dist_man3_MANS): Distribute and install ParseArgv(3).
	(EXTRA_DIST): Distribute get_image_offset.c (not built).
	(noinst_HEADERS): Remove vax_conversions.h (not used).

	* doc/Makefile: Removed.
	* doc/Makefile.am: New.

	* testdir/run_tests.csh: Use -e flag to stop on error.  Look
	for expected output files in $srcdir.

	* testdir/Makefile: Removed.
	* testdir/Makefile.am: New.

	* configure.in: 
	* Makefile.am: Adjust for testdir/Makefile.

2003-01-07  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* autogen.sh: New.
	* Makefile.am: New.
	* configure.in: Updated to use automake, libtool.

	* AUTHORS: New. 
	* LICENCE: Renamed to ...
	* COPYING: ... this.  Makes automake happier.

	* progs/coordinates/voxeltoworld.man1:
	* progs/minccopy/minccopy.man1:
	* progs/mincdiff/mincdiff.man1:
	* progs/mincedit/mincedit.man1:
	* progs/mincextract/mincextract.man1:
	* progs/minctoraw/minctoraw.man1:
	* progs/mincview/invert_raw_image.man1:
	* progs/mincview/mincview.man1:
	* progs/mincwindow/mincwindow.man1:
	* progs/xfm/transformtags.man1:
	* progs/xfm/xfmconcat.man1:
	* progs/xfm/xfminvert.man1: New.

2002-12-11  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* progs/minccalc/gram.y: Insert missing semicolon at end
	of "exprlist" production.

2002-12-05  Steve Robbins  <swmgr@shadow.bic.mni.mcgill.ca>

	* volume_io/Include/vol_io_prototypes.h: Add prototype
	for get_volume_translation().

2002-11-05  Jason Lerch	      <jason@bic.mni.mcgill.ca>

	* progs/mincresample/mincresample.{c,h}: changed the setting of
	the interpolation type to go through an enum rather than directly
	to a function pointer, as that is the behaviour that ParseArgv
	expects and also makes mincresample 64 bit safe.

2002-10-30  Jason Lerch       <jason@bic.mni.mcgill.ca>

	* libsrc/ParseArgv: added the ARGV_LONG argument type.
	* progs/mincresample/mincresample.c: changed the parsing of the
	nelements arguments to be ARGV_LONG.

2002-09-05  Andrew Janke  <a.janke@gmail.com>

	* progs/mincstats/mincstats.c: Change command line option
	"-max_bins" to "-int_max_bins", to avoid clash with option "-max".

2002-09-03  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* CHANGES: Renamed ...
	* NEWS: ... to this.  NEWS is the place to document important
	user-visible changes.  The ChangeLog is the place for more detailed
	notes.  See http://www.gnu.org/prep/standards.html.

	* volume_io/MNI_formats/gen_xfs.c (transform_or_invert_point): Do
	not flip inverse_flag when transform inverted.

	* volume_io/Testing/test-xfm.c: New.  Regression tests
	for General_transforms.

2002-08-22  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* volume_io/Documentation/volume_io.tex (section{Volume Input}): 
	Clarify notion of vector volume and vector-to-scalar conversion.

	* progs/minccalc/eval.c: 
	* progs/minccalc/gram.y:
	* progs/minccalc/lex.l:
	* progs/minccalc/minccalc.man1: 
	* progs/minccalc/node.c:
	* progs/minccalc/node.h: Add support for tan, asin, acos, and
	atan, courtesy of Andrew Janke.

2002-08-04  Peter Neelin  <neelin@bic.mni.mcgill.ca>

	* progs/rawtominc/rawtominc.c: Add slightly modified code from
	Colin Holmes to support -skip option.

2002-04-08  John Sled  <jgsled@bic.mni.mcgill.ca>

	* progs/mincstats/mincstats.c: Do not call fclose() on NULL file
	pointer.

2002-02-22  Steve M. Robbins  <steve@nyongwa.montreal.qc.ca>

	* libsrc/ParseArgv.h: Declare code with "C" linkage when included
	by C++ compiler.